gene detail

Gene description

TAIR ID: AT2G45810

Short description: DEA(D/H)-box RNA helicase family protein

Pathogen responsiveness: -0.96

General responsiveness: -1.63

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

mRNA processing, mRNA transport

GO cellular component

cytoplasm, cytosol

GO molecular function

ATP-dependent helicase activity, ATP binding

Protein domain

Pfam	PF00270, DEAD/DEAH box helicase
Pfam	PF00271, Helicase conserved C-terminal domain
SMART	SM00487, DEXDc
SMART	SM00490, HELICc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03018: RNA degradation

Transcriptional regulation

Regulator:
AT1G51600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	-1.89	1.47E-03
GSE17464	Laer, control	Laer, Flg22 1 h	-1.90	3.27E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-1.52	3.47E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-2.15	5.60E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-2.30	2.41E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.53	8.76E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.57	1.30E-05
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.06	7.32E-09
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.83	2.19E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.75	1.03E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.73	1.29E-03