Gene: AT2G41720
     

Gene description


TAIR ID: AT2G41720

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -0.92

General responsiveness: 0.18

GO biological process


RNA splicing, RNA modification, embryo development ending in seed dormancy, chloroplast mRNA processing


GO cellular component


chloroplast, mitochondrion


GO molecular function


endonuclease activity, RNA binding


Protein domain


PfamPF13041, PPR repeat family
PfamPF13812, Pentatricopeptide repeat domain
PfamPF01535, PPR repeat

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


9 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, erf104 ko, water 4 hCol, erf104 ko, Flg22 4 h-1.513.03E-02
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-1.571.12E-04
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.271.73E-09
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.704.51E-07
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-1.744.96E-05
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.665.10E-15
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.532.06E-14
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.669.36E-13
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.548.84E-08






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