GO Enrichment Analysis of Co-expressed Genes with
AT2G41720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042407: cristae formation | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0009658: chloroplast organization | 3.80E-06 |
| 5 | GO:0042026: protein refolding | 1.27E-05 |
| 6 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 5.64E-05 |
| 7 | GO:0006438: valyl-tRNA aminoacylation | 5.64E-05 |
| 8 | GO:0009767: photosynthetic electron transport chain | 8.84E-05 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 1.02E-04 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.37E-04 |
| 11 | GO:0043039: tRNA aminoacylation | 1.37E-04 |
| 12 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.37E-04 |
| 13 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.37E-04 |
| 14 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.37E-04 |
| 15 | GO:0080183: response to photooxidative stress | 1.37E-04 |
| 16 | GO:0006418: tRNA aminoacylation for protein translation | 1.63E-04 |
| 17 | GO:0006730: one-carbon metabolic process | 1.99E-04 |
| 18 | GO:0016117: carotenoid biosynthetic process | 2.58E-04 |
| 19 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.41E-04 |
| 20 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.41E-04 |
| 21 | GO:0033014: tetrapyrrole biosynthetic process | 3.41E-04 |
| 22 | GO:0043572: plastid fission | 3.41E-04 |
| 23 | GO:2001141: regulation of RNA biosynthetic process | 3.41E-04 |
| 24 | GO:0019464: glycine decarboxylation via glycine cleavage system | 4.56E-04 |
| 25 | GO:0006546: glycine catabolic process | 4.56E-04 |
| 26 | GO:0009902: chloroplast relocation | 4.56E-04 |
| 27 | GO:0006479: protein methylation | 4.56E-04 |
| 28 | GO:0016123: xanthophyll biosynthetic process | 5.78E-04 |
| 29 | GO:0009247: glycolipid biosynthetic process | 5.78E-04 |
| 30 | GO:0010236: plastoquinone biosynthetic process | 5.78E-04 |
| 31 | GO:0010190: cytochrome b6f complex assembly | 7.07E-04 |
| 32 | GO:1901259: chloroplast rRNA processing | 8.44E-04 |
| 33 | GO:0006458: 'de novo' protein folding | 8.44E-04 |
| 34 | GO:0009853: photorespiration | 8.69E-04 |
| 35 | GO:0048564: photosystem I assembly | 1.13E-03 |
| 36 | GO:0008610: lipid biosynthetic process | 1.13E-03 |
| 37 | GO:0019375: galactolipid biosynthetic process | 1.13E-03 |
| 38 | GO:0000105: histidine biosynthetic process | 1.13E-03 |
| 39 | GO:0071482: cellular response to light stimulus | 1.29E-03 |
| 40 | GO:0048193: Golgi vesicle transport | 1.29E-03 |
| 41 | GO:0009657: plastid organization | 1.29E-03 |
| 42 | GO:0006783: heme biosynthetic process | 1.45E-03 |
| 43 | GO:0043067: regulation of programmed cell death | 1.62E-03 |
| 44 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.62E-03 |
| 45 | GO:0006415: translational termination | 1.97E-03 |
| 46 | GO:0019684: photosynthesis, light reaction | 1.97E-03 |
| 47 | GO:0006352: DNA-templated transcription, initiation | 1.97E-03 |
| 48 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.97E-03 |
| 49 | GO:0045037: protein import into chloroplast stroma | 2.16E-03 |
| 50 | GO:0010020: chloroplast fission | 2.56E-03 |
| 51 | GO:0090351: seedling development | 2.76E-03 |
| 52 | GO:0009790: embryo development | 3.01E-03 |
| 53 | GO:0007017: microtubule-based process | 3.40E-03 |
| 54 | GO:0061077: chaperone-mediated protein folding | 3.63E-03 |
| 55 | GO:0007005: mitochondrion organization | 3.86E-03 |
| 56 | GO:0009741: response to brassinosteroid | 5.09E-03 |
| 57 | GO:0010197: polar nucleus fusion | 5.09E-03 |
| 58 | GO:0009793: embryo development ending in seed dormancy | 5.19E-03 |
| 59 | GO:0009646: response to absence of light | 5.35E-03 |
| 60 | GO:0010183: pollen tube guidance | 5.61E-03 |
| 61 | GO:0032502: developmental process | 6.15E-03 |
| 62 | GO:0010286: heat acclimation | 7.00E-03 |
| 63 | GO:0010027: thylakoid membrane organization | 7.59E-03 |
| 64 | GO:0009627: systemic acquired resistance | 8.19E-03 |
| 65 | GO:0008219: cell death | 9.13E-03 |
| 66 | GO:0006629: lipid metabolic process | 1.00E-02 |
| 67 | GO:0009637: response to blue light | 1.08E-02 |
| 68 | GO:0009409: response to cold | 1.10E-02 |
| 69 | GO:0006810: transport | 1.22E-02 |
| 70 | GO:0009744: response to sucrose | 1.29E-02 |
| 71 | GO:0009846: pollen germination | 1.51E-02 |
| 72 | GO:0042538: hyperosmotic salinity response | 1.51E-02 |
| 73 | GO:0009735: response to cytokinin | 1.63E-02 |
| 74 | GO:0009416: response to light stimulus | 1.78E-02 |
| 75 | GO:0006096: glycolytic process | 1.79E-02 |
| 76 | GO:0006396: RNA processing | 2.09E-02 |
| 77 | GO:0009742: brassinosteroid mediated signaling pathway | 2.13E-02 |
| 78 | GO:0006457: protein folding | 2.31E-02 |
| 79 | GO:0006413: translational initiation | 2.87E-02 |
| 80 | GO:0007623: circadian rhythm | 3.02E-02 |
| 81 | GO:0006470: protein dephosphorylation | 3.32E-02 |
| 82 | GO:0009860: pollen tube growth | 4.34E-02 |
| 83 | GO:0007049: cell cycle | 4.45E-02 |
| 84 | GO:0048366: leaf development | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 3 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.88E-07 |
| 4 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.27E-05 |
| 5 | GO:0004400: histidinol-phosphate transaminase activity | 5.64E-05 |
| 6 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 5.64E-05 |
| 7 | GO:0004831: tyrosine-tRNA ligase activity | 5.64E-05 |
| 8 | GO:0004325: ferrochelatase activity | 5.64E-05 |
| 9 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 5.64E-05 |
| 10 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 5.64E-05 |
| 11 | GO:0004832: valine-tRNA ligase activity | 5.64E-05 |
| 12 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 5.64E-05 |
| 13 | GO:0044183: protein binding involved in protein folding | 6.52E-05 |
| 14 | GO:0004618: phosphoglycerate kinase activity | 1.37E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 1.37E-04 |
| 16 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 1.37E-04 |
| 17 | GO:0004817: cysteine-tRNA ligase activity | 1.37E-04 |
| 18 | GO:0010291: carotene beta-ring hydroxylase activity | 1.37E-04 |
| 19 | GO:0005528: FK506 binding | 1.46E-04 |
| 20 | GO:0051082: unfolded protein binding | 1.96E-04 |
| 21 | GO:0004751: ribose-5-phosphate isomerase activity | 2.34E-04 |
| 22 | GO:0004812: aminoacyl-tRNA ligase activity | 2.58E-04 |
| 23 | GO:0008276: protein methyltransferase activity | 3.41E-04 |
| 24 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 3.41E-04 |
| 25 | GO:0035250: UDP-galactosyltransferase activity | 3.41E-04 |
| 26 | GO:0016149: translation release factor activity, codon specific | 3.41E-04 |
| 27 | GO:0001053: plastid sigma factor activity | 4.56E-04 |
| 28 | GO:0016987: sigma factor activity | 4.56E-04 |
| 29 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 4.56E-04 |
| 30 | GO:0008374: O-acyltransferase activity | 5.78E-04 |
| 31 | GO:0080030: methyl indole-3-acetate esterase activity | 7.07E-04 |
| 32 | GO:0004033: aldo-keto reductase (NADP) activity | 1.13E-03 |
| 33 | GO:0005198: structural molecule activity | 1.23E-03 |
| 34 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.28E-03 |
| 35 | GO:0003747: translation release factor activity | 1.45E-03 |
| 36 | GO:0008081: phosphoric diester hydrolase activity | 2.36E-03 |
| 37 | GO:0031072: heat shock protein binding | 2.36E-03 |
| 38 | GO:0008483: transaminase activity | 7.00E-03 |
| 39 | GO:0016597: amino acid binding | 7.29E-03 |
| 40 | GO:0043621: protein self-association | 1.36E-02 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.59E-02 |
| 42 | GO:0022857: transmembrane transporter activity | 1.96E-02 |
| 43 | GO:0016787: hydrolase activity | 1.96E-02 |
| 44 | GO:0003779: actin binding | 2.00E-02 |
| 45 | GO:0019843: rRNA binding | 2.40E-02 |
| 46 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.45E-02 |
| 47 | GO:0019825: oxygen binding | 2.54E-02 |
| 48 | GO:0005516: calmodulin binding | 2.68E-02 |
| 49 | GO:0008565: protein transporter activity | 2.73E-02 |
| 50 | GO:0005525: GTP binding | 2.93E-02 |
| 51 | GO:0008194: UDP-glycosyltransferase activity | 3.27E-02 |
| 52 | GO:0005509: calcium ion binding | 3.33E-02 |
| 53 | GO:0003743: translation initiation factor activity | 3.37E-02 |
| 54 | GO:0042802: identical protein binding | 3.58E-02 |
| 55 | GO:0003824: catalytic activity | 3.95E-02 |
| 56 | GO:0016788: hydrolase activity, acting on ester bonds | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.52E-23 |
| 3 | GO:0009570: chloroplast stroma | 3.00E-15 |
| 4 | GO:0009941: chloroplast envelope | 2.40E-11 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 2.29E-08 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.59E-05 |
| 7 | GO:0010319: stromule | 1.93E-05 |
| 8 | GO:0009579: thylakoid | 9.27E-05 |
| 9 | GO:0030095: chloroplast photosystem II | 1.02E-04 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.63E-04 |
| 11 | GO:0005960: glycine cleavage complex | 3.41E-04 |
| 12 | GO:0019898: extrinsic component of membrane | 3.49E-04 |
| 13 | GO:0055035: plastid thylakoid membrane | 5.78E-04 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.45E-03 |
| 15 | GO:0009706: chloroplast inner membrane | 2.07E-03 |
| 16 | GO:0009534: chloroplast thylakoid | 3.87E-03 |
| 17 | GO:0031969: chloroplast membrane | 6.77E-03 |
| 18 | GO:0005778: peroxisomal membrane | 7.00E-03 |
| 19 | GO:0009536: plastid | 9.66E-03 |
| 20 | GO:0090406: pollen tube | 1.29E-02 |
| 21 | GO:0005856: cytoskeleton | 1.40E-02 |
| 22 | GO:0022626: cytosolic ribosome | 1.70E-02 |
| 23 | GO:0005623: cell | 2.45E-02 |
| 24 | GO:0005759: mitochondrial matrix | 2.82E-02 |
| 25 | GO:0048046: apoplast | 3.79E-02 |
| 26 | GO:0005874: microtubule | 4.68E-02 |