gene detail

Gene description

TAIR ID: AT2G40140

Short description: zinc finger (CCCH-type) family protein

Pathogen responsiveness: 1.61

General responsiveness: 1.26

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to cold, defense response to fungus, regulation of transcription, DNA-templated, response to chitin

GO cellular component

nucleus

GO molecular function

protein binding, metal ion binding, DNA binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Pfam	PF13637, Ankyrin repeats (many copies)
SMART	SM00356, ZnF_C3H1
SMART	SM00248, ANK

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850, AT4G36990, AT4G31800

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

58 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.51	2.86E-06
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.30	4.58E-08
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	1.62	1.54E-07
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	2.08	4.26E-02
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	3.30	2.75E-02
GSE17464	Laer, control	Laer, Flg22 1 h	2.52	9.86E-06
GSE17464	Penta, control	Penta, Flg22 2 h	2.46	1.53E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.50	6.33E-03
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	2.16	3.03E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.53	3.94E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.34	1.35E-05
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	2.33	3.97E-13
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.77	1.53E-11
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	3.59	9.41E-09
GSE2169	Col, WT, water	Col, WT, chitin 30 min	1.73	1.46E-09
GSE2169	Col, rre1, water	Col, rre1, chitin 30 min	2.19	1.72E-11
GSE2169	Col, rre2, water	Col, rre2, chitin 30 min	1.88	2.32E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.75	1.80E-06
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	3.03	1.62E-07
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	2.94	2.50E-07
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.71	1.32E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.80	5.43E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.81	1.92E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.58	2.26E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.78	6.38E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	4.37	1.31E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.19	7.65E-12
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	4.58	7.49E-14
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.72	1.91E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	5.10	6.02E-15
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	4.64	9.29E-14
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	3.04	5.64E-05
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.68	1.08E-02
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	3.06	1.68E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.72	9.12E-05
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	3.36	6.30E-05
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	1.97	4.68E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	2.00	2.03E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.50	2.06E-16
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.10	1.49E-12
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.81	3.96E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.71	4.47E-18
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	2.04	8.40E-12
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.74	2.43E-09
GSE5615	Col, WT, water 1 h	Col, WT, HrpZ 1 h	1.69	5.33E-05
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	2.25	6.89E-08
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	2.34	3.60E-04
GSE5685	Col, WT, control 24 h	Col, WT, Ps ES4326 24 h	1.55	5.73E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	3.24	7.29E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.85	2.93E-07
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.48	1.03E-05
GSE73351	Ws-4, map65_3, control	Ws-4, map65_3, H.ara Emwa1 3 d	1.90	3.02E-02
GSE8319	Col, WT, control	Col, WT, chitooctaose 30 min	3.20	3.39E-16
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	3.60	1.58E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	4.24	1.52E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min	1.80	2.35E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	3.02	7.50E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	4.17	1.91E-04