gene detail

Gene description

TAIR ID: AT2G39820

Short description: Translation initiation factor IF6

Pathogen responsiveness: -2.56

General responsiveness: -4.87

Orthologous

Rice:

OS07G0639800

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

maturation of 5.8S rRNA, translational initiation, mature ribosome assembly, ribosomal subunit export from nucleus, maturation of LSU-rRNA, assembly of large subunit precursor of preribosome

GO cellular component

nucleus, nucleolus, cytosol, preribosome, large subunit precursor

GO molecular function

translation initiation factor activity, ribosome binding, ribosomal large subunit binding

Protein domain

Pfam	PF01912, eIF-6 family
SMART	SM00654, eIF6

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03008: Ribosome biogenesis in eukaryotes

Transcriptional regulation

Regulator:
AT3G09290

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

No coexpression gene

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.14	3.19E-02
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.16	2.96E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	-1.52	3.39E-06