gene detail

Gene description

TAIR ID: AT2G37220

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: -0.07

General responsiveness: 0.93

Orthologous

Rice:

OS03G0376600 OS07G0158300 OS09G0279500

Maize:

GRMZM2G068715 GRMZM2G158835

Wheat:

TA.396.1.S1_AT

GO biological process

mRNA processing, response to cold, innate immune response, response to abscisic acid

GO cellular component

chloroplast envelope, intracellular ribonucleoprotein complex, chloroplast, chloroplast thylakoid, chloroplast stroma, chloroplast thylakoid membrane, thylakoid

GO molecular function

unkown

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.76	1.58E-03
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.91	7.37E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.57	1.15E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.64	2.61E-06
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.71	2.50E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.05	4.16E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.61	1.11E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.31	2.91E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.76	1.84E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.29	3.29E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.80	1.29E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.09	1.11E-10
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.91	3.54E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.87	1.07E-11
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.70	5.37E-06