gene detail

Gene description

TAIR ID: AT2G34430

Short description: light-harvesting chlorophyll-protein complex II subunit B1

Pathogen responsiveness: -0.31

General responsiveness: 2.48

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to light stimulus, photosynthesis, light harvesting in photosystem II, light harvesting in photosystem I, protein-chromophore linkage

GO cellular component

chloroplast thylakoid membrane, membrane, chloroplast, chloroplast envelope, thylakoid membrane, integral component of membrane, plastoglobule, chloroplast thylakoid, light-harvesting complex, photosystem I, thylakoid, photosystem II

GO molecular function

pigment binding, chlorophyll binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT5G13790, AT5G61850, AT4G31800

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.69	1.26E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.64	1.15E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-4.90	1.69E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.09	3.28E-08
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.76	4.15E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.28	2.52E-05
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-2.15	1.94E-04
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.61	2.22E-06
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.63	4.85E-03
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-3.08	3.54E-08
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-3.36	1.91E-09
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	-1.82	2.65E-03
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.61	4.35E-03
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.28	9.53E-05