gene detail

Gene description

TAIR ID: AT2G29580

Short description: CCCH-type zinc fingerfamily protein with RNA-binding domain

Pathogen responsiveness: -3.27

General responsiveness: -2.38

Orthologous

Rice: No orthologous gene

Maize:

GRMZM5G831993

Wheat:

TA.14515.1.S1_AT

GO biological process

spliceosomal snRNP assembly

GO cellular component

Prp19 complex, U2-type catalytic step 1 spliceosome, U2-type catalytic step 2 spliceosome, nucleus

GO molecular function

protein binding, DNA binding, pre-mRNA binding, U6 snRNA binding, metal ion binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Pfam	PF16131, Torus domain
SMART	SM00360, RRM
SMART	SM00356, ZnF_C3H1

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT1G51600, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE5686_WT_GO view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.86	2.99E-02