gene detail

Gene description

TAIR ID: AT2G18670

Short description: RING/U-box superfamily protein

Pathogen responsiveness: 0.82

General responsiveness: -0.64

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G420012

Wheat: No orthologous gene

GO biological process

protein ubiquitination

GO cellular component

nucleus, integral component of membrane

GO molecular function

metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

32 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.51	1.59E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.61	1.27E-04
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	2.32	4.98E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.61	7.14E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	3.10	9.28E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	3.31	6.55E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.95	3.58E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.69	1.09E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.78	2.85E-15
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	3.94	1.34E-12
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.03	7.80E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	4.09	2.86E-13
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	3.09	7.16E-11
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	1.82	7.31E-05
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	3.85	1.72E-09
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	1.93	3.30E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	3.97	1.01E-09
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.44	8.61E-08
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	2.25	3.29E-06
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.70	7.76E-09
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	3.40	2.99E-11
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	3.12	6.34E-11
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	2.73	2.19E-07
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	3.17	2.27E-11
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	2.54	5.47E-07
GSE56094	Col, WT, control 5 h	Col, WT, hrpA- 5 h	1.69	1.02E-03
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.67	6.22E-04
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	2.27	5.06E-06
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	2.30	8.38E-07
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	2.97	3.72E-09
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	2.17	3.35E-06
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	2.28	3.30E-06