Gene: AT2G18090
     

Gene description


TAIR ID: AT2G18090

Short description: PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein

Pathogen responsiveness: -0.79

General responsiveness: -1.03

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


regulation of transcription, DNA-templated


GO cellular component


nucleus


GO molecular function


metal ion binding


Protein domain


PfamPF02213, GYF domain
PfamPF02201, SWIB/MDM2 domain
SMARTSM00249, PHD
SMARTSM00151, SWIB
SMARTSM00444, GYF

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


12 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h1.592.60E-07
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h1.607.73E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.626.70E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.511.72E-08
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h1.596.00E-13
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.582.73E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h2.094.56E-13
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.628.32E-09
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h1.506.87E-08
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h1.902.48E-11
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h2.063.46E-12
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h1.703.73E-09






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