co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016236: macroautophagy	0.00E+00
2	GO:0007160: cell-matrix adhesion	0.00E+00
3	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
4	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
5	GO:0000188: inactivation of MAPK activity	0.00E+00
6	GO:0030242: pexophagy	3.37E-05
7	GO:0071902: positive regulation of protein serine/threonine kinase activity	3.37E-05
8	GO:0031338: regulation of vesicle fusion	3.37E-05
9	GO:0008361: regulation of cell size	3.56E-05
10	GO:0006521: regulation of cellular amino acid metabolic process	8.48E-05
11	GO:0090630: activation of GTPase activity	1.47E-04
12	GO:0006517: protein deglycosylation	1.47E-04
13	GO:0001927: exocyst assembly	1.47E-04
14	GO:0006013: mannose metabolic process	1.47E-04
15	GO:0010506: regulation of autophagy	1.47E-04
16	GO:0032012: regulation of ARF protein signal transduction	1.47E-04
17	GO:0071230: cellular response to amino acid stimulus	1.47E-04
18	GO:0031929: TOR signaling	1.47E-04
19	GO:2000114: regulation of establishment of cell polarity	2.18E-04
20	GO:1901000: regulation of response to salt stress	2.18E-04
21	GO:0072583: clathrin-dependent endocytosis	2.18E-04
22	GO:0010587: miRNA catabolic process	2.18E-04
23	GO:0080119: ER body organization	2.18E-04
24	GO:0006893: Golgi to plasma membrane transport	2.18E-04
25	GO:0045723: positive regulation of fatty acid biosynthetic process	2.95E-04
26	GO:1990937: xylan acetylation	2.95E-04
27	GO:0045324: late endosome to vacuole transport	2.95E-04
28	GO:0010188: response to microbial phytotoxin	2.95E-04
29	GO:0016049: cell growth	3.49E-04
30	GO:0007029: endoplasmic reticulum organization	3.77E-04
31	GO:0010225: response to UV-C	3.77E-04
32	GO:0032876: negative regulation of DNA endoreduplication	3.77E-04
33	GO:0034052: positive regulation of plant-type hypersensitive response	3.77E-04
34	GO:0009697: salicylic acid biosynthetic process	3.77E-04
35	GO:0046777: protein autophosphorylation	4.36E-04
36	GO:0048232: male gamete generation	4.63E-04
37	GO:0009267: cellular response to starvation	4.63E-04
38	GO:0045491: xylan metabolic process	4.63E-04
39	GO:0009635: response to herbicide	4.63E-04
40	GO:0006886: intracellular protein transport	5.23E-04
41	GO:0010310: regulation of hydrogen peroxide metabolic process	5.53E-04
42	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.47E-04
43	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	6.47E-04
44	GO:0030307: positive regulation of cell growth	6.47E-04
45	GO:0006397: mRNA processing	6.90E-04
46	GO:0009846: pollen germination	7.35E-04
47	GO:0009642: response to light intensity	7.44E-04
48	GO:0006491: N-glycan processing	7.44E-04
49	GO:0048766: root hair initiation	7.44E-04
50	GO:0006605: protein targeting	7.44E-04
51	GO:0060321: acceptance of pollen	8.45E-04
52	GO:0006417: regulation of translation	8.67E-04
53	GO:0005982: starch metabolic process	1.06E-03
54	GO:0018105: peptidyl-serine phosphorylation	1.13E-03
55	GO:0006298: mismatch repair	1.17E-03
56	GO:0000398: mRNA splicing, via spliceosome	1.26E-03
57	GO:0000266: mitochondrial fission	1.40E-03
58	GO:0046854: phosphatidylinositol phosphorylation	1.78E-03
59	GO:0007030: Golgi organization	1.78E-03
60	GO:0080188: RNA-directed DNA methylation	1.78E-03
61	GO:0042023: DNA endoreduplication	1.91E-03
62	GO:0006487: protein N-linked glycosylation	2.05E-03
63	GO:0006289: nucleotide-excision repair	2.05E-03
64	GO:0008380: RNA splicing	2.21E-03
65	GO:0048511: rhythmic process	2.33E-03
66	GO:0006366: transcription from RNA polymerase II promoter	2.33E-03
67	GO:0045492: xylan biosynthetic process	2.78E-03
68	GO:0009561: megagametogenesis	2.78E-03
69	GO:0010091: trichome branching	2.78E-03
70	GO:0006468: protein phosphorylation	3.02E-03
71	GO:0042752: regulation of circadian rhythm	3.42E-03
72	GO:0006623: protein targeting to vacuole	3.59E-03
73	GO:0032502: developmental process	3.93E-03
74	GO:0016579: protein deubiquitination	4.64E-03
75	GO:0009816: defense response to bacterium, incompatible interaction	5.02E-03
76	GO:0006888: ER to Golgi vesicle-mediated transport	5.40E-03
77	GO:0008219: cell death	5.79E-03
78	GO:0009834: plant-type secondary cell wall biogenesis	6.20E-03
79	GO:0006499: N-terminal protein myristoylation	6.20E-03
80	GO:0008283: cell proliferation	8.14E-03
81	GO:0009908: flower development	8.30E-03
82	GO:0000209: protein polyubiquitination	8.37E-03
83	GO:0009737: response to abscisic acid	8.39E-03
84	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.30E-03
85	GO:0042538: hyperosmotic salinity response	9.54E-03
86	GO:0006364: rRNA processing	1.00E-02
87	GO:0010224: response to UV-B	1.03E-02
88	GO:0048367: shoot system development	1.15E-02
89	GO:0009626: plant-type hypersensitive response	1.18E-02
90	GO:0009651: response to salt stress	1.49E-02
91	GO:0009845: seed germination	1.59E-02
92	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.05E-02
93	GO:0006470: protein dephosphorylation	2.08E-02
94	GO:0009860: pollen tube growth	2.72E-02
95	GO:0006810: transport	2.75E-02
96	GO:0048366: leaf development	2.90E-02
97	GO:0016192: vesicle-mediated transport	3.12E-02
98	GO:0009751: response to salicylic acid	3.93E-02
99	GO:0048364: root development	4.10E-02
100	GO:0016310: phosphorylation	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0004694: eukaryotic translation initiation factor 2alpha kinase activity	0.00E+00
3	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
4	GO:0045131: pre-mRNA branch point binding	0.00E+00
5	GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	8.48E-05
6	GO:0004534: 5'-3' exoribonuclease activity	8.48E-05
7	GO:0005047: signal recognition particle binding	1.47E-04
8	GO:0030276: clathrin binding	1.53E-04
9	GO:0005086: ARF guanyl-nucleotide exchange factor activity	2.95E-04
10	GO:0017137: Rab GTPase binding	3.77E-04
11	GO:0004559: alpha-mannosidase activity	5.53E-04
12	GO:0005085: guanyl-nucleotide exchange factor activity	6.47E-04
13	GO:0030674: protein binding, bridging	7.44E-04
14	GO:0004430: 1-phosphatidylinositol 4-kinase activity	8.45E-04
15	GO:0016874: ligase activity	1.04E-03
16	GO:0031490: chromatin DNA binding	1.06E-03
17	GO:0000049: tRNA binding	1.40E-03
18	GO:0004725: protein tyrosine phosphatase activity	1.91E-03
19	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.33E-03
20	GO:0003713: transcription coactivator activity	3.25E-03
21	GO:0005515: protein binding	3.70E-03
22	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.76E-03
23	GO:0003684: damaged DNA binding	4.28E-03
24	GO:0003924: GTPase activity	5.18E-03
25	GO:0009931: calcium-dependent protein serine/threonine kinase activity	5.21E-03
26	GO:0004672: protein kinase activity	5.23E-03
27	GO:0003729: mRNA binding	5.32E-03
28	GO:0004683: calmodulin-dependent protein kinase activity	5.40E-03
29	GO:0005096: GTPase activator activity	5.99E-03
30	GO:0003697: single-stranded DNA binding	6.82E-03
31	GO:0004712: protein serine/threonine/tyrosine kinase activity	7.25E-03
32	GO:0008270: zinc ion binding	7.71E-03
33	GO:0005198: structural molecule activity	8.82E-03
34	GO:0008026: ATP-dependent helicase activity	1.34E-02
35	GO:0004386: helicase activity	1.37E-02
36	GO:0005525: GTP binding	1.52E-02
37	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.65E-02
38	GO:0008017: microtubule binding	1.96E-02
39	GO:0004674: protein serine/threonine kinase activity	2.42E-02
40	GO:0004842: ubiquitin-protein transferase activity	2.58E-02
41	GO:0003682: chromatin binding	2.69E-02
42	GO:0061630: ubiquitin protein ligase activity	3.12E-02
43	GO:0016301: kinase activity	3.70E-02

Rank	GO Term	Adjusted P value
1	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0008305: integrin complex	0.00E+00
4	GO:0071561: nucleus-vacuole junction	0.00E+00
5	GO:0071942: XPC complex	0.00E+00
6	GO:0000139: Golgi membrane	1.23E-05
7	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	3.37E-05
8	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	3.37E-05
9	GO:0045334: clathrin-coated endocytic vesicle	3.37E-05
10	GO:0031931: TORC1 complex	1.47E-04
11	GO:0030127: COPII vesicle coat	4.63E-04
12	GO:0032588: trans-Golgi network membrane	4.63E-04
13	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.47E-04
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.45E-04
15	GO:0005681: spliceosomal complex	9.21E-04
16	GO:0015030: Cajal body	1.06E-03
17	GO:0005794: Golgi apparatus	1.13E-03
18	GO:0019013: viral nucleocapsid	1.52E-03
19	GO:0005802: trans-Golgi network	2.39E-03
20	GO:0005634: nucleus	2.64E-03
21	GO:0005768: endosome	2.81E-03
22	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.12E-03
23	GO:0005770: late endosome	3.25E-03
24	GO:0009504: cell plate	3.59E-03
25	GO:0000145: exocyst	3.93E-03
26	GO:0030529: intracellular ribonucleoprotein complex	4.83E-03
27	GO:0005829: cytosol	5.37E-03
28	GO:0005643: nuclear pore	5.79E-03
29	GO:0010008: endosome membrane	1.15E-02
30	GO:0012505: endomembrane system	1.26E-02
31	GO:0009506: plasmodesma	2.61E-02
32	GO:0005874: microtubule	2.94E-02
33	GO:0005886: plasma membrane	4.16E-02