gene detail

Gene description

TAIR ID: AT2G16595

Short description: Translocon-associated protein (TRAP), alpha subunit

Pathogen responsiveness: -0.24

General responsiveness: 0.35

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

endoplasmic reticulum, integral component of membrane, chloroplast, endoplasmic reticulum membrane

GO molecular function

molecular_function

Protein domain

Pfam	PF03896, Translocon-associated protein (TRAP), alpha subunit

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04141: Protein processing in endoplasmic reticulum

Transcriptional regulation

Regulator:
AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	1.79	2.04E-03
GSE11807	Col, mpk6 ko, water 4 h	Col, mpk6 ko, Flg22 4 h	1.74	5.57E-03
GSE17464	Laer, control	Laer, PstDC3000 12 h	1.77	2.04E-08
GSE17464	Penta, control	Penta, PstDC3000 12 h	2.11	8.33E-11
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.63	4.43E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.54	3.59E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.66	3.07E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.70	2.98E-08
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.75	1.10E-05
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.62	1.45E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.98	9.17E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.99	6.37E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.03	6.05E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.38	4.58E-14
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.78	2.10E-13
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.84	7.66E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.78	4.74E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.91	1.14E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.54	3.53E-02