gene detail

Gene description

TAIR ID: AT2G05070

Short description: photosystem II light harvesting complex gene 2.2

Pathogen responsiveness: 0.82

General responsiveness: 3.24

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.27751.6.S1_AT

GO biological process

response to desiccation, regulation of stomatal closure, protein-chromophore linkage, positive regulation of reactive oxygen species biosynthetic process, response to red light, response to high light intensity, response to low light intensity stimulus, photosynthesis, response to cold, response to far red light, light harvesting in photosystem I, response to light stimulus, cellular response to abscisic acid stimulus, light harvesting in photosystem II, water homeostasis

GO cellular component

photosystem I, chloroplast thylakoid membrane, PSII associated light-harvesting complex II, plastoglobule, chloroplast, chloroplast thylakoid, chloroplast envelope, vacuolar membrane, integral component of membrane, light-harvesting complex, thylakoid, photosystem II

GO molecular function

chlorophyll binding, pigment binding, metal ion binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT2G02820, AT1G14350

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

25 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-3.44	8.96E-23
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-3.32	4.20E-22
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.04	4.52E-12
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-3.87	8.26E-18
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-1.90	1.58E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-3.21	3.57E-16
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.56	4.67E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.78	1.81E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.61	4.64E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-6.95	4.45E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.28	1.79E-09
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-4.02	7.42E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-2.93	4.81E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-3.69	2.37E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.30	2.36E-05
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.54	9.06E-03
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-3.13	2.63E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.97	5.88E-04
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-4.00	7.24E-12
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	-1.91	1.58E-03
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-3.48	7.04E-10
GSE56094	Col, WT, control 3 h	Col, WT, hrpA- 3 h	-1.58	1.25E-02
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.00	3.59E-04
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.73	4.05E-06
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.86	2.05E-04