Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G05070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015717: triose phosphate transport0.00E+00
2GO:0030388: fructose 1,6-bisphosphate metabolic process0.00E+00
3GO:0009715: chalcone biosynthetic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
9GO:0016118: carotenoid catabolic process0.00E+00
10GO:0015979: photosynthesis2.88E-25
11GO:0009768: photosynthesis, light harvesting in photosystem I3.57E-23
12GO:0018298: protein-chromophore linkage1.58E-20
13GO:0010196: nonphotochemical quenching8.07E-11
14GO:0009645: response to low light intensity stimulus8.07E-11
15GO:0042549: photosystem II stabilization4.06E-09
16GO:0006094: gluconeogenesis6.61E-09
17GO:0010114: response to red light9.52E-09
18GO:0010207: photosystem II assembly9.58E-09
19GO:0009644: response to high light intensity1.28E-08
20GO:0006000: fructose metabolic process1.40E-08
21GO:0009769: photosynthesis, light harvesting in photosystem II1.78E-08
22GO:0010218: response to far red light8.31E-08
23GO:0009637: response to blue light1.30E-07
24GO:0010205: photoinhibition1.35E-07
25GO:0009416: response to light stimulus1.79E-07
26GO:0009773: photosynthetic electron transport in photosystem I2.86E-07
27GO:0019253: reductive pentose-phosphate cycle7.33E-07
28GO:0035304: regulation of protein dephosphorylation2.37E-06
29GO:0006002: fructose 6-phosphate metabolic process5.59E-06
30GO:0010206: photosystem II repair7.84E-06
31GO:0090391: granum assembly8.63E-06
32GO:0019684: photosynthesis, light reaction1.81E-05
33GO:0005983: starch catabolic process2.29E-05
34GO:0010027: thylakoid membrane organization2.57E-05
35GO:0005986: sucrose biosynthetic process2.84E-05
36GO:0009765: photosynthesis, light harvesting3.60E-05
37GO:0006021: inositol biosynthetic process3.60E-05
38GO:0009409: response to cold8.26E-05
39GO:0009735: response to cytokinin9.05E-05
40GO:0042742: defense response to bacterium1.56E-04
41GO:0055114: oxidation-reduction process1.88E-04
42GO:0009642: response to light intensity1.97E-04
43GO:0051775: response to redox state2.25E-04
44GO:0065002: intracellular protein transmembrane transport2.25E-04
45GO:0080093: regulation of photorespiration2.25E-04
46GO:0043007: maintenance of rDNA2.25E-04
47GO:0031998: regulation of fatty acid beta-oxidation2.25E-04
48GO:0043953: protein transport by the Tat complex2.25E-04
49GO:0006096: glycolytic process2.46E-04
50GO:0006098: pentose-phosphate shunt2.95E-04
51GO:0015995: chlorophyll biosynthetic process4.54E-04
52GO:0043085: positive regulation of catalytic activity4.76E-04
53GO:0097054: L-glutamate biosynthetic process5.00E-04
54GO:0006729: tetrahydrobiopterin biosynthetic process5.00E-04
55GO:0016121: carotene catabolic process5.00E-04
56GO:0009629: response to gravity5.00E-04
57GO:0016124: xanthophyll catabolic process5.00E-04
58GO:0010042: response to manganese ion5.00E-04
59GO:0045454: cell redox homeostasis5.75E-04
60GO:0006108: malate metabolic process6.19E-04
61GO:0006006: glucose metabolic process6.19E-04
62GO:0034599: cellular response to oxidative stress7.39E-04
63GO:0035436: triose phosphate transmembrane transport8.13E-04
64GO:1902448: positive regulation of shade avoidance8.13E-04
65GO:0009269: response to desiccation1.15E-03
66GO:0042823: pyridoxal phosphate biosynthetic process1.16E-03
67GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.16E-03
68GO:0006020: inositol metabolic process1.16E-03
69GO:0071484: cellular response to light intensity1.16E-03
70GO:0006107: oxaloacetate metabolic process1.16E-03
71GO:0006537: glutamate biosynthetic process1.16E-03
72GO:0006734: NADH metabolic process1.54E-03
73GO:0019676: ammonia assimilation cycle1.54E-03
74GO:0015976: carbon utilization1.54E-03
75GO:0019464: glycine decarboxylation via glycine cleavage system1.54E-03
76GO:0006109: regulation of carbohydrate metabolic process1.54E-03
77GO:0045727: positive regulation of translation1.54E-03
78GO:0015994: chlorophyll metabolic process1.54E-03
79GO:0006546: glycine catabolic process1.54E-03
80GO:0015713: phosphoglycerate transport1.54E-03
81GO:0006662: glycerol ether metabolic process1.87E-03
82GO:0010236: plastoquinone biosynthetic process1.97E-03
83GO:0006097: glyoxylate cycle1.97E-03
84GO:0016123: xanthophyll biosynthetic process1.97E-03
85GO:0006814: sodium ion transport2.00E-03
86GO:0080167: response to karrikin2.07E-03
87GO:0006979: response to oxidative stress2.29E-03
88GO:0046855: inositol phosphate dephosphorylation2.43E-03
89GO:0009635: response to herbicide2.43E-03
90GO:0009643: photosynthetic acclimation2.43E-03
91GO:0050665: hydrogen peroxide biosynthetic process2.43E-03
92GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.43E-03
93GO:0010189: vitamin E biosynthetic process2.91E-03
94GO:0009854: oxidative photosynthetic carbon pathway2.91E-03
95GO:0071470: cellular response to osmotic stress2.91E-03
96GO:0009772: photosynthetic electron transport in photosystem II3.43E-03
97GO:0071446: cellular response to salicylic acid stimulus3.43E-03
98GO:0030026: cellular manganese ion homeostasis3.43E-03
99GO:1900057: positive regulation of leaf senescence3.43E-03
100GO:0031540: regulation of anthocyanin biosynthetic process3.98E-03
101GO:0030091: protein repair3.98E-03
102GO:0016311: dephosphorylation4.10E-03
103GO:0009813: flavonoid biosynthetic process4.53E-03
104GO:0032544: plastid translation4.56E-03
105GO:2000031: regulation of salicylic acid mediated signaling pathway4.56E-03
106GO:0071482: cellular response to light stimulus4.56E-03
107GO:0006754: ATP biosynthetic process5.16E-03
108GO:0009245: lipid A biosynthetic process5.16E-03
109GO:0006099: tricarboxylic acid cycle5.71E-03
110GO:0009688: abscisic acid biosynthetic process6.45E-03
111GO:0048829: root cap development6.45E-03
112GO:0009744: response to sucrose7.04E-03
113GO:0000272: polysaccharide catabolic process7.13E-03
114GO:0009750: response to fructose7.13E-03
115GO:0018119: peptidyl-cysteine S-nitrosylation7.13E-03
116GO:0009698: phenylpropanoid metabolic process7.13E-03
117GO:0009073: aromatic amino acid family biosynthetic process7.13E-03
118GO:0009658: chloroplast organization7.57E-03
119GO:0045037: protein import into chloroplast stroma7.84E-03
120GO:0006790: sulfur compound metabolic process7.84E-03
121GO:0009767: photosynthetic electron transport chain8.57E-03
122GO:0010628: positive regulation of gene expression8.57E-03
123GO:0006302: double-strand break repair9.33E-03
124GO:0010224: response to UV-B9.83E-03
125GO:0090351: seedling development1.01E-02
126GO:0046854: phosphatidylinositol phosphorylation1.01E-02
127GO:0046688: response to copper ion1.01E-02
128GO:0005985: sucrose metabolic process1.01E-02
129GO:0006636: unsaturated fatty acid biosynthetic process1.09E-02
130GO:0006833: water transport1.09E-02
131GO:0048511: rhythmic process1.34E-02
132GO:0061077: chaperone-mediated protein folding1.34E-02
133GO:0051321: meiotic cell cycle1.34E-02
134GO:0019748: secondary metabolic process1.43E-02
135GO:0006810: transport1.52E-02
136GO:0005975: carbohydrate metabolic process1.61E-02
137GO:0009561: megagametogenesis1.62E-02
138GO:0046686: response to cadmium ion1.68E-02
139GO:0034220: ion transmembrane transport1.81E-02
140GO:0042631: cellular response to water deprivation1.81E-02
141GO:0042335: cuticle development1.81E-02
142GO:0010182: sugar mediated signaling pathway1.91E-02
143GO:0015986: ATP synthesis coupled proton transport2.01E-02
144GO:0019252: starch biosynthetic process2.11E-02
145GO:0008654: phospholipid biosynthetic process2.11E-02
146GO:0009791: post-embryonic development2.11E-02
147GO:0006633: fatty acid biosynthetic process2.14E-02
148GO:0071554: cell wall organization or biogenesis2.22E-02
149GO:0007623: circadian rhythm2.35E-02
150GO:0009567: double fertilization forming a zygote and endosperm2.54E-02
151GO:0051607: defense response to virus2.77E-02
152GO:0009627: systemic acquired resistance3.12E-02
153GO:0048573: photoperiodism, flowering3.24E-02
154GO:0009834: plant-type secondary cell wall biogenesis3.73E-02
155GO:0006811: ion transport3.73E-02
156GO:0010119: regulation of stomatal movement3.86E-02
157GO:0045893: positive regulation of transcription, DNA-templated3.97E-02
158GO:0016051: carbohydrate biosynthetic process4.12E-02
159GO:0009853: photorespiration4.12E-02
160GO:0042542: response to hydrogen peroxide4.79E-02
161GO:0009640: photomorphogenesis4.93E-02
162GO:0009926: auxin polar transport4.93E-02
RankGO TermAdjusted P value
1GO:0010486: manganese:proton antiporter activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
4GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
5GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
8GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
9GO:0016210: naringenin-chalcone synthase activity0.00E+00
10GO:0010242: oxygen evolving activity0.00E+00
11GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
14GO:0031409: pigment binding6.41E-24
15GO:0016168: chlorophyll binding3.43E-19
16GO:0008266: poly(U) RNA binding7.33E-07
17GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity2.37E-06
18GO:0046872: metal ion binding2.46E-05
19GO:0016491: oxidoreductase activity7.56E-05
20GO:0016615: malate dehydrogenase activity8.46E-05
21GO:0004332: fructose-bisphosphate aldolase activity8.46E-05
22GO:0030060: L-malate dehydrogenase activity1.17E-04
23GO:0045485: omega-6 fatty acid desaturase activity2.25E-04
24GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.25E-04
25GO:0008746: NAD(P)+ transhydrogenase activity2.25E-04
26GO:0016041: glutamate synthase (ferredoxin) activity2.25E-04
27GO:0045486: naringenin 3-dioxygenase activity2.25E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.25E-04
29GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.25E-04
30GO:0050308: sugar-phosphatase activity2.25E-04
31GO:0019203: carbohydrate phosphatase activity2.25E-04
32GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.25E-04
33GO:0071949: FAD binding2.95E-04
34GO:0008047: enzyme activator activity4.12E-04
35GO:0008967: phosphoglycolate phosphatase activity5.00E-04
36GO:0047746: chlorophyllase activity5.00E-04
37GO:0010297: heteropolysaccharide binding5.00E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity5.00E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity5.00E-04
40GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.00E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity5.00E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity5.00E-04
43GO:0004512: inositol-3-phosphate synthase activity5.00E-04
44GO:0031072: heat shock protein binding6.19E-04
45GO:0004565: beta-galactosidase activity6.19E-04
46GO:0071917: triose-phosphate transmembrane transporter activity8.13E-04
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.13E-04
48GO:0004324: ferredoxin-NADP+ reductase activity8.13E-04
49GO:0003913: DNA photolyase activity8.13E-04
50GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.16E-03
51GO:0016851: magnesium chelatase activity1.16E-03
52GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.16E-03
53GO:0008508: bile acid:sodium symporter activity1.16E-03
54GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.16E-03
55GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.16E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity1.16E-03
57GO:0008891: glycolate oxidase activity1.54E-03
58GO:0015120: phosphoglycerate transmembrane transporter activity1.54E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.54E-03
60GO:0047134: protein-disulfide reductase activity1.60E-03
61GO:0051538: 3 iron, 4 sulfur cluster binding1.97E-03
62GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.97E-03
63GO:0003959: NADPH dehydrogenase activity1.97E-03
64GO:0004791: thioredoxin-disulfide reductase activity2.00E-03
65GO:0015035: protein disulfide oxidoreductase activity2.25E-03
66GO:0042578: phosphoric ester hydrolase activity2.43E-03
67GO:2001070: starch binding2.43E-03
68GO:0031177: phosphopantetheine binding2.43E-03
69GO:0000293: ferric-chelate reductase activity2.43E-03
70GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.61E-03
71GO:0019843: rRNA binding2.88E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.91E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.91E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.91E-03
75GO:0000035: acyl binding2.91E-03
76GO:0009881: photoreceptor activity3.43E-03
77GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process3.98E-03
78GO:0008135: translation factor activity, RNA binding4.56E-03
79GO:0030145: manganese ion binding4.98E-03
80GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.16E-03
81GO:0005384: manganese ion transmembrane transporter activity5.79E-03
82GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.79E-03
83GO:0050661: NADP binding6.22E-03
84GO:0030234: enzyme regulator activity6.45E-03
85GO:0004185: serine-type carboxypeptidase activity7.04E-03
86GO:0005515: protein binding7.16E-03
87GO:0051287: NAD binding8.53E-03
88GO:0005315: inorganic phosphate transmembrane transporter activity8.57E-03
89GO:0004089: carbonate dehydratase activity8.57E-03
90GO:0003712: transcription cofactor activity1.01E-02
91GO:0031418: L-ascorbic acid binding1.17E-02
92GO:0003954: NADH dehydrogenase activity1.17E-02
93GO:0004857: enzyme inhibitor activity1.17E-02
94GO:0005528: FK506 binding1.17E-02
95GO:0008324: cation transmembrane transporter activity1.26E-02
96GO:0008408: 3'-5' exonuclease activity1.34E-02
97GO:0051082: unfolded protein binding1.36E-02
98GO:0008514: organic anion transmembrane transporter activity1.62E-02
99GO:0003756: protein disulfide isomerase activity1.62E-02
100GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.91E-02
101GO:0050662: coenzyme binding2.01E-02
102GO:0010181: FMN binding2.01E-02
103GO:0048038: quinone binding2.22E-02
104GO:0005509: calcium ion binding2.29E-02
105GO:0016413: O-acetyltransferase activity2.77E-02
106GO:0016787: hydrolase activity2.87E-02
107GO:0015250: water channel activity2.88E-02
108GO:0042802: identical protein binding2.99E-02
109GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.36E-02
110GO:0003746: translation elongation factor activity4.12E-02
111GO:0003993: acid phosphatase activity4.25E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009783: photosystem II antenna complex0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0009534: chloroplast thylakoid1.66E-56
7GO:0009535: chloroplast thylakoid membrane5.09E-52
8GO:0009507: chloroplast1.36E-51
9GO:0009941: chloroplast envelope3.17E-43
10GO:0009579: thylakoid1.77E-37
11GO:0010287: plastoglobule4.80E-27
12GO:0009570: chloroplast stroma8.47E-23
13GO:0009522: photosystem I6.17E-21
14GO:0030076: light-harvesting complex2.16E-19
15GO:0009523: photosystem II1.54E-14
16GO:0031977: thylakoid lumen4.14E-12
17GO:0048046: apoplast5.03E-12
18GO:0030095: chloroplast photosystem II9.52E-11
19GO:0009543: chloroplast thylakoid lumen3.87E-10
20GO:0042651: thylakoid membrane3.44E-08
21GO:0009517: PSII associated light-harvesting complex II1.99E-07
22GO:0009654: photosystem II oxygen evolving complex2.00E-06
23GO:0009538: photosystem I reaction center3.84E-06
24GO:0016020: membrane3.97E-06
25GO:0019898: extrinsic component of membrane1.03E-05
26GO:0009706: chloroplast inner membrane3.48E-05
27GO:0031969: chloroplast membrane6.39E-05
28GO:0016021: integral component of membrane1.23E-04
29GO:0009533: chloroplast stromal thylakoid1.54E-04
30GO:0031361: integral component of thylakoid membrane2.25E-04
31GO:0009782: photosystem I antenna complex2.25E-04
32GO:0000791: euchromatin2.25E-04
33GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.95E-04
34GO:0010319: stromule3.15E-04
35GO:0030870: Mre11 complex5.00E-04
36GO:0043036: starch grain5.00E-04
37GO:0000427: plastid-encoded plastid RNA polymerase complex5.00E-04
38GO:0031304: intrinsic component of mitochondrial inner membrane5.00E-04
39GO:0010007: magnesium chelatase complex8.13E-04
40GO:0033281: TAT protein transport complex8.13E-04
41GO:0005960: glycine cleavage complex1.16E-03
42GO:0009544: chloroplast ATP synthase complex1.54E-03
43GO:0055035: plastid thylakoid membrane1.97E-03
44GO:0000795: synaptonemal complex1.97E-03
45GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.43E-03
46GO:0005623: cell2.98E-03
47GO:0008180: COP9 signalosome5.16E-03
48GO:0005777: peroxisome1.10E-02
49GO:0005770: late endosome1.91E-02
50GO:0005773: vacuole2.31E-02
51GO:0000785: chromatin2.32E-02
52GO:0005840: ribosome2.77E-02
53GO:0019005: SCF ubiquitin ligase complex3.48E-02
54GO:0031902: late endosome membrane4.66E-02
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Gene type



Gene DE type