gene detail

Gene description

TAIR ID: AT2G04240

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -0.80

General responsiveness: -0.72

Orthologous

Rice:

OS08G0492500 OS10G0438800

Maize:

GRMZM2G005840

Wheat: No orthologous gene

GO biological process

proteasome-mediated ubiquitin-dependent protein catabolic process, abscisic acid metabolic process, response to salt stress, response to gibberellin, abscisic acid biosynthetic process, protein ubiquitination, response to osmotic stress, response to chitin

GO cellular component

integral component of membrane

GO molecular function

ubiquitin protein ligase activity, metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G14920, AT2G01570, AT2G43010, AT3G03450

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	1.88	7.73E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.51	4.99E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.90	2.63E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.03	6.20E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.85	4.89E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.69	1.09E-11