gene detail

Gene description

TAIR ID: AT2G01860

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -1.15

General responsiveness: -0.87

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G428579

Wheat: No orthologous gene

GO biological process

RNA modification

GO cellular component

mitochondrion, intracellular membrane-bounded organelle

GO molecular function

endonuclease activity, RNA binding

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF13812, Pentatricopeptide repeat domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.63	4.62E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.63	1.05E-08
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	1.60	1.54E-02
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.54	7.40E-11
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.63	3.79E-12
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.64	6.27E-12
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.53	9.03E-10
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.84	9.25E-14