gene detail

Gene description

TAIR ID: AT1G80270

Short description: PENTATRICOPEPTIDE REPEAT 596

Pathogen responsiveness: -1.45

General responsiveness: -0.20

Orthologous

Rice:

Maize:

Wheat:

GO biological process

RNA modification

GO cellular component

chloroplast envelope, mitochondrion

GO molecular function

endonuclease activity, RNA binding

Protein domain

Pfam	PF13812, Pentatricopeptide repeat domain
Pfam	PF01535, PPR repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G09290

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

Coexpression network

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.72	4.21E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.67	8.19E-11
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.67	5.40E-03