gene detail

Gene description

TAIR ID: AT1G78570

Short description: rhamnose biosynthesis 1

Pathogen responsiveness: -0.84

General responsiveness: -0.20

Orthologous

Rice:

OS03G0278200

Maize:

GRMZM2G166767

Wheat: No orthologous gene

GO biological process

UDP-rhamnose biosynthetic process, flavonol biosynthetic process, oxidation-reduction process, cell wall organization, auxin efflux, nucleotide-sugar metabolic process, cell differentiation, regulation of cell proliferation

GO cellular component

cytosol, chloroplast, plasmodesma

GO molecular function

isomerase activity, UDP-L-rhamnose synthase activity, catalytic activity, UDP-glucose 4,6-dehydratase activity, oxidoreductase activity, dTDP-glucose 4,6-dehydratase activity

Protein domain

Pfam	PF16363, GDP-mannose 4,6 dehydratase
Pfam	PF04321, RmlD substrate binding domain

Metabolic pathway

PWY-3261: UDP-L-rhamnose biosynthesis
PWY-5114: UDP-sugars interconversion

KEGG pathway

PATH:ath00520: Amino sugar and nucleotide sugar metabolism

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

11 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.20	9.62E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.11	1.68E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.79	2.08E-11
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.78	1.34E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.71	4.84E-11
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	1.66	1.17E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.59	4.00E-11
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.55	2.99E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.50	2.13E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-1.59	5.67E-08

Showing 1 to 10 of 11 entries

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