gene detail

Gene description

TAIR ID: AT1G67360

Short description: Rubber elongation factor protein (REF)

Pathogen responsiveness: -0.21

General responsiveness: 0.92

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

pollen development, lipid particle organization, positive regulation of growth, positive regulation of response to water deprivation, developmental vegetative growth

GO cellular component

vacuole, cytoplasm, lipid droplet, endoplasmic reticulum

GO molecular function

unkown

Protein domain

Pfam	PF05755, Rubber elongation factor protein (REF)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.82	4.10E-06
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.98	1.39E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.00	2.31E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.65	3.13E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-1.64	1.53E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	2.15	8.62E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-1.88	7.76E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	2.04	2.95E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.62	7.81E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.83	2.38E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.21	9.52E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.34	1.87E-12
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.86	3.78E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.81	1.72E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.64	2.54E-02
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.14	1.27E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.86	2.82E-02