gene detail

Gene description

TAIR ID: AT1G66230

Short description: myb domain protein 20

Pathogen responsiveness: -0.40

General responsiveness: 0.13

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.18675.1.S1_AT

GO biological process

regulation of transcription from RNA polymerase II promoter, negative regulation of transcription, DNA-templated, positive regulation of response to salt stress, regulation of transcription, cell differentiation, regulation of secondary cell wall biogenesis

GO cellular component

nucleus

GO molecular function

core promoter sequence-specific DNA binding, transcription factor activity, sequence-specific DNA binding, transcription regulatory region DNA binding, RNA polymerase II transcription factor activity, RNA polymerase II transcription factor recruiting

Protein domain

Pfam	PF00249, Myb-like DNA-binding domain
SMART	SM00717, SANT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G32770

Target:
AT5G48930, AT1G51680, AT2G30490

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-1.77	5.11E-04
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-2.66	2.21E-07
GSE17464	Penta, control	Penta, PstDC3000 12 h	-2.60	3.69E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-1.53	8.16E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.69	1.11E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.77	1.65E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.58	9.30E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.67	4.74E-08
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	1.55	2.29E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.67	1.65E-07
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.62	3.40E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	2.02	6.89E-03