Gene: AT1G57820
     


Gene description


TAIR ID: AT1G57820

Short description: Zinc finger (C3HC4-type RING finger) family protein

Pathogen responsiveness: -1.92

General responsiveness: -0.75

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G339151  

Wheat:

TA.9515.1.S1_AT  


GO biological process


DNA methylation on cytosine within a CG sequence, DNA methylation on cytosine, protein ubiquitination, maintenance of DNA methylation, positive regulation of methylation-dependent chromatin silencing, chromatin organization, pericentric heterochromatin assembly, regulation of transcription, DNA-templated, covalent chromatin modification, cell division


GO cellular component


nuclear heterochromatin, nucleus, chromocenter


GO molecular function


histone binding, ubiquitin protein ligase activity, ubiquitin-protein transferase activity, metal ion binding


Protein domain


PfamPF13920, Zinc finger, C3HC4 type (RING finger)
PfamPF02182, SAD/SRA domain
PfamPF13445, RING-type zinc-finger
SMARTSM00466, SRA
SMARTSM00249, PHD
SMARTSM00184, RING

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G51600, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


1 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h-1.511.72E-02






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