gene detail

Gene description

TAIR ID: AT1G55000

Short description: peptidoglycan-binding LysM domain-containing protein

Pathogen responsiveness: -1.39

General responsiveness: -0.47

Orthologous

Rice:

OS03G0699600

Maize:

GRMZM2G123128

Wheat: No orthologous gene

GO biological process

protein ubiquitination, cell wall macromolecule catabolic process

GO cellular component

unkown

GO molecular function

molecular_function

Protein domain

Pfam	PF01476, LysM domain
Pfam	PF12937, F-box-like
SMART	SM00257, LysM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G13450, AT3G24050

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	1.87	3.57E-08
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.58	1.31E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.62	4.23E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.62	3.70E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.54	5.16E-10
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.76	1.38E-03