Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G55000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0018316: peptide cross-linking via L-cystine0.00E+00
4GO:0009767: photosynthetic electron transport chain7.84E-06
5GO:0072387: flavin adenine dinucleotide metabolic process1.13E-05
6GO:0071454: cellular response to anoxia1.13E-05
7GO:0080153: negative regulation of reductive pentose-phosphate cycle3.00E-05
8GO:0010343: singlet oxygen-mediated programmed cell death3.00E-05
9GO:1901529: positive regulation of anion channel activity3.00E-05
10GO:0010617: circadian regulation of calcium ion oscillation3.00E-05
11GO:0099402: plant organ development3.00E-05
12GO:1902448: positive regulation of shade avoidance5.40E-05
13GO:1901672: positive regulation of systemic acquired resistance5.40E-05
14GO:1901332: negative regulation of lateral root development8.23E-05
15GO:0050482: arachidonic acid secretion8.23E-05
16GO:1902347: response to strigolactone1.14E-04
17GO:0010117: photoprotection1.49E-04
18GO:0046283: anthocyanin-containing compound metabolic process1.49E-04
19GO:0006555: methionine metabolic process1.86E-04
20GO:1901371: regulation of leaf morphogenesis1.86E-04
21GO:0060918: auxin transport1.86E-04
22GO:0010019: chloroplast-nucleus signaling pathway2.25E-04
23GO:0010310: regulation of hydrogen peroxide metabolic process2.25E-04
24GO:0019509: L-methionine salvage from methylthioadenosine2.25E-04
25GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.25E-04
26GO:0051510: regulation of unidimensional cell growth2.66E-04
27GO:0010038: response to metal ion2.66E-04
28GO:0006644: phospholipid metabolic process3.08E-04
29GO:0048564: photosystem I assembly3.08E-04
30GO:0009821: alkaloid biosynthetic process3.97E-04
31GO:1900426: positive regulation of defense response to bacterium4.44E-04
32GO:0009638: phototropism4.44E-04
33GO:0008356: asymmetric cell division4.44E-04
34GO:0043085: positive regulation of catalytic activity5.39E-04
35GO:0010075: regulation of meristem growth6.40E-04
36GO:0009785: blue light signaling pathway6.40E-04
37GO:0034605: cellular response to heat6.92E-04
38GO:0019253: reductive pentose-phosphate cycle6.92E-04
39GO:0006071: glycerol metabolic process7.99E-04
40GO:2000377: regulation of reactive oxygen species metabolic process8.54E-04
41GO:0016226: iron-sulfur cluster assembly1.02E-03
42GO:0070417: cellular response to cold1.20E-03
43GO:0010118: stomatal movement1.26E-03
44GO:0042752: regulation of circadian rhythm1.39E-03
45GO:0009646: response to absence of light1.39E-03
46GO:0015995: chlorophyll biosynthetic process2.17E-03
47GO:0018298: protein-chromophore linkage2.32E-03
48GO:0009416: response to light stimulus2.38E-03
49GO:0006811: ion transport2.48E-03
50GO:0010218: response to far red light2.48E-03
51GO:0009637: response to blue light2.72E-03
52GO:0010114: response to red light3.23E-03
53GO:0009744: response to sucrose3.23E-03
54GO:0009640: photomorphogenesis3.23E-03
55GO:0009644: response to high light intensity3.41E-03
56GO:0009058: biosynthetic process6.09E-03
57GO:0007623: circadian rhythm7.34E-03
58GO:0009658: chloroplast organization9.96E-03
59GO:0046777: protein autophosphorylation1.21E-02
60GO:0009751: response to salicylic acid1.51E-02
61GO:0048364: root development1.57E-02
62GO:0009753: response to jasmonic acid1.60E-02
63GO:0009611: response to wounding2.33E-02
64GO:0006511: ubiquitin-dependent protein catabolic process2.85E-02
65GO:0009414: response to water deprivation3.73E-02
66GO:0006810: transport4.99E-02
RankGO TermAdjusted P value
1GO:0046906: tetrapyrrole binding1.13E-05
2GO:0004180: carboxypeptidase activity5.40E-05
3GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity5.40E-05
4GO:0032947: protein complex scaffold5.40E-05
5GO:0004848: ureidoglycolate hydrolase activity5.40E-05
6GO:0009882: blue light photoreceptor activity8.23E-05
7GO:0004623: phospholipase A2 activity1.49E-04
8GO:0000293: ferric-chelate reductase activity1.86E-04
9GO:0019899: enzyme binding2.66E-04
10GO:0008889: glycerophosphodiester phosphodiesterase activity3.97E-04
11GO:0071949: FAD binding3.97E-04
12GO:0016844: strictosidine synthase activity4.44E-04
13GO:0031072: heat shock protein binding6.40E-04
14GO:0051536: iron-sulfur cluster binding8.54E-04
15GO:0008080: N-acetyltransferase activity1.33E-03
16GO:0048038: quinone binding1.52E-03
17GO:0008236: serine-type peptidase activity2.25E-03
18GO:0005198: structural molecule activity3.50E-03
19GO:0031625: ubiquitin protein ligase binding4.24E-03
20GO:0051082: unfolded protein binding5.03E-03
21GO:0016746: transferase activity, transferring acyl groups5.13E-03
22GO:0016491: oxidoreductase activity6.28E-03
23GO:0042802: identical protein binding8.67E-03
24GO:0016788: hydrolase activity, acting on ester bonds1.01E-02
25GO:0061630: ubiquitin protein ligase activity1.20E-02
26GO:0042803: protein homodimerization activity1.36E-02
27GO:0046872: metal ion binding1.48E-02
28GO:0005507: copper ion binding2.95E-02
29GO:0005506: iron ion binding3.75E-02
30GO:0004842: ubiquitin-protein transferase activity4.78E-02
31GO:0004672: protein kinase activity4.99E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.03E-06
2GO:0031972: chloroplast intermembrane space1.13E-05
3GO:0016605: PML body5.40E-05
4GO:0031969: chloroplast membrane5.82E-05
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.97E-04
6GO:0016604: nuclear body4.44E-04
7GO:0043234: protein complex7.99E-04
8GO:0005773: vacuole2.55E-02
9GO:0009534: chloroplast thylakoid2.63E-02
10GO:0009570: chloroplast stroma3.15E-02
11GO:0009536: plastid4.39E-02
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Gene type



Gene DE type