gene detail

Gene description

TAIR ID: AT1G53000

Short description: Nucleotide-diphospho-sugar transferases superfamily protein

Pathogen responsiveness: -1.16

General responsiveness: -1.58

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G119256

Wheat: No orthologous gene

GO biological process

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process, lipopolysaccharide biosynthetic process, cell wall organization, pollen tube growth, pollen development

GO cellular component

integral component of mitochondrial outer membrane, mitochondrion, cytoplasm, integral component of membrane

GO molecular function

3-deoxy-manno-octulosonate cytidylyltransferase activity, nucleotidyltransferase activity

Protein domain

Pfam	PF02348, Cytidylyltransferase

Metabolic pathway

PWY-1269: CMP-KDO biosynthesis I
PWY-5111: CMP-KDO biosynthesis II (from D-arabinose 5-phosphate)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G14230

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.53	4.49E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-1.72	2.03E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.54	1.15E-09
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.60	5.22E-10