gene detail

Gene description

TAIR ID: AT1G35680

Short description: Ribosomal protein L21

Pathogen responsiveness: 0.20

General responsiveness: 1.71

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G018403 GRMZM2G054149

Wheat: No orthologous gene

GO biological process

translation, embryo development ending in seed dormancy, response to cold, chloroplast organization, thylakoid membrane organization, embryo development

GO cellular component

chloroplast envelope, chloroplast, nucleus, chloroplast stroma, ribosome

GO molecular function

structural constituent of ribosome, rRNA binding

Protein domain

Pfam	PF00829, Ribosomal prokaryotic L21 protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03010: Ribosome

Transcriptional regulation

Regulator:
AT5G41315

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

22 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.88	4.77E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.41	3.84E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.06	2.02E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-4.70	6.36E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.64	2.83E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.90	1.36E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.47	7.03E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.51	1.32E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.10	4.36E-05
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.78	2.91E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.71	3.72E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.28	1.79E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.79	5.14E-15
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.35	1.49E-11
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.59	4.63E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.32	2.65E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.71	2.45E-14
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.96	1.05E-08
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.69	1.40E-06
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.23	2.28E-10
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.02	2.52E-08
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.91	2.52E-06