gene detail

Gene description

TAIR ID: AT1G32340

Short description: NDR1/HIN1-like 8

Pathogen responsiveness: -0.81

General responsiveness: -2.06

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G342039

Wheat:

TAAFFX.63964.1.S1_AT

GO biological process

protein polyubiquitination, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, positive regulation of proteasomal ubiquitin-dependent protein catabolic process

GO cellular component

cytoplasm, nucleus, ubiquitin ligase complex

GO molecular function

ubiquitin conjugating enzyme binding, ubiquitin protein ligase activity, metal ion binding

Protein domain

Pfam	PF01485, IBR domain, a half RING-finger domain
Pfam	PF05773, RWD domain
SMART	SM00184, RING
SMART	SM00647, IBR
SMART	SM00591, RWD

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G01900, AT4G31800, AT1G80840

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.70	3.07E-11
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.74	6.79E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.38	2.49E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.87	3.04E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.03	1.57E-12
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.53	2.51E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.67	7.23E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.11	1.28E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.31	6.74E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.02	5.69E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.83	1.46E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.88	8.56E-14