gene detail

Gene description

TAIR ID: AT1G31540

Short description: Disease resistance protein (TIR-NBS-LRR class) family

Pathogen responsiveness: -1.11

General responsiveness: -3.74

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

defense response

GO cellular component

cytoplasm, plasmodesma

GO molecular function

unkown

Protein domain

Pfam	PF01582, TIR domain
Pfam	PF07725, Leucine Rich Repeat
Pfam	PF00931, NB-ARC domain
SMART	SM00382, AAA
SMART	SM00255, TIR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G56110, AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.94	1.67E-12
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.36	1.09E-10
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	2.20	4.68E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.86	1.55E-12
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	1.80	2.33E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.77	1.20E-07
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.69	1.59E-08
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.60	4.27E-02

Showing 1 to 8 of 8 entries

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