gene detail

Gene description

TAIR ID: AT1G30100

Short description: nine-cis-epoxycarotenoid dioxygenase 5

Pathogen responsiveness: -0.49

General responsiveness: -3.93

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

seed dormancy process, abscisic acid biosynthetic process, response to water deprivation, oxidation-reduction process

GO cellular component

chloroplast thylakoid membrane, thylakoid, chloroplast

GO molecular function

9-cis-epoxycarotenoid dioxygenase activity, metal ion binding

Protein domain

Pfam	PF03055, Retinal pigment epithelial membrane protein

Metabolic pathway

PWY-695: abscisic acid biosynthesis

KEGG pathway

PATH:ath00906: Carotenoid biosynthesis

Transcriptional regulation

Regulator:
AT3G14230

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	1.78	2.07E-12
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	3.79	6.82E-09
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	3.82	4.65E-09
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	3.57	8.54E-09
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.27	6.41E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.57	5.95E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.74	1.49E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.93	5.22E-14
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	-2.10	2.29E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.61	3.31E-03
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	-1.85	4.08E-02
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.75	8.96E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.71	3.65E-02