Gene: AT1G28050
     

Gene description


TAIR ID: AT1G28050

Short description: B-box type zinc finger protein with CCT domain

Pathogen responsiveness: -0.53

General responsiveness: -0.81

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G159996  

Wheat: No orthologous gene

GO biological process


regulation of transcription, DNA-templated


GO cellular component


nucleus


GO molecular function


protein binding, transcription factor activity, sequence-specific DNA binding, zinc ion binding


Protein domain


PfamPF06203, CCT motif
SMARTSM00336, BBOX

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 15 (Top20%)

click to view PPI network

Differentially expressed condition


9 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h2.324.48E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h3.081.98E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h3.032.99E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h3.999.43E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h1.517.05E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h1.797.95E-11
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h2.042.09E-06
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.586.45E-10
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.652.45E-02






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.