gene detail

Gene description

TAIR ID: AT1G22330

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: -0.47

General responsiveness: -0.19

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G303915

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

nucleus

GO molecular function

unkown

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT4G31800

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

21 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.54	6.06E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.58	9.64E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.65	3.76E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.52	1.60E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.68	1.88E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.52	1.98E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.96	3.60E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.92	4.29E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.78	3.25E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.74	6.37E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.39	1.07E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.24	1.87E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.41	7.83E-17
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.75	6.25E-09
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.83	3.68E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.28	5.38E-11
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	-1.73	1.10E-08
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-2.16	3.68E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.58	3.45E-05
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.76	1.96E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.02	1.46E-03