gene detail

Gene description

TAIR ID: AT1G21600

Short description: plastid transcriptionally active 6

Pathogen responsiveness: 0.01

General responsiveness: 0.43

Orthologous

Rice:

OS12G0110400

Maize:

GRMZM5G829928

Wheat: No orthologous gene

GO biological process

positive regulation of transcription, DNA-templated, transcription from plastid promoter

GO cellular component

plastid chromosome, chloroplast, nucleoid

GO molecular function

molecular_function

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G11590, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

25 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	-1.62	2.24E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-1.57	2.65E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-2.25	2.55E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-2.22	4.33E-05
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.75	6.10E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.08	7.20E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.94	2.22E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.63	5.86E-09
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.69	3.71E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.62	6.05E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.53	1.31E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.79	8.41E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.74	8.24E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.26	6.21E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.80	2.15E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.57	1.53E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.89	8.33E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.27	8.68E-11
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.59	3.50E-08
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.37	7.56E-17
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.81	2.63E-11
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.66	5.08E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.57	2.26E-09
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.60	3.36E-09
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.54	1.03E-05