Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G21600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
11GO:0046460: neutral lipid biosynthetic process0.00E+00
12GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0044249: cellular biosynthetic process0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0009658: chloroplast organization1.51E-08
16GO:0009793: embryo development ending in seed dormancy7.40E-07
17GO:0006353: DNA-templated transcription, termination1.18E-05
18GO:0009657: plastid organization1.69E-05
19GO:0010027: thylakoid membrane organization8.95E-05
20GO:0042793: transcription from plastid promoter1.74E-04
21GO:0006730: one-carbon metabolic process2.32E-04
22GO:0042026: protein refolding2.36E-04
23GO:0009790: embryo development3.07E-04
24GO:0042547: cell wall modification involved in multidimensional cell growth3.52E-04
25GO:0042371: vitamin K biosynthetic process3.52E-04
26GO:0000023: maltose metabolic process3.52E-04
27GO:0006419: alanyl-tRNA aminoacylation3.52E-04
28GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.52E-04
29GO:0000476: maturation of 4.5S rRNA3.52E-04
30GO:0000967: rRNA 5'-end processing3.52E-04
31GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.52E-04
32GO:0005980: glycogen catabolic process3.52E-04
33GO:0070509: calcium ion import3.52E-04
34GO:0000105: histidine biosynthetic process3.84E-04
35GO:0009451: RNA modification4.38E-04
36GO:0032544: plastid translation4.70E-04
37GO:0071482: cellular response to light stimulus4.70E-04
38GO:1900865: chloroplast RNA modification6.66E-04
39GO:0042325: regulation of phosphorylation7.67E-04
40GO:0009220: pyrimidine ribonucleotide biosynthetic process7.67E-04
41GO:0001682: tRNA 5'-leader removal7.67E-04
42GO:0034470: ncRNA processing7.67E-04
43GO:0006420: arginyl-tRNA aminoacylation7.67E-04
44GO:0009629: response to gravity7.67E-04
45GO:0060359: response to ammonium ion7.67E-04
46GO:0048255: mRNA stabilization7.67E-04
47GO:0007154: cell communication7.67E-04
48GO:0018026: peptidyl-lysine monomethylation7.67E-04
49GO:0006352: DNA-templated transcription, initiation8.95E-04
50GO:0006415: translational termination8.95E-04
51GO:0042780: tRNA 3'-end processing1.24E-03
52GO:0043157: response to cation stress1.24E-03
53GO:0005977: glycogen metabolic process1.24E-03
54GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.24E-03
55GO:0045910: negative regulation of DNA recombination1.24E-03
56GO:0048281: inflorescence morphogenesis1.24E-03
57GO:0006954: inflammatory response1.24E-03
58GO:0090351: seedling development1.45E-03
59GO:2001141: regulation of RNA biosynthetic process1.79E-03
60GO:0051085: chaperone mediated protein folding requiring cofactor1.79E-03
61GO:0010239: chloroplast mRNA processing1.79E-03
62GO:0006164: purine nucleotide biosynthetic process1.79E-03
63GO:0010148: transpiration1.79E-03
64GO:0016556: mRNA modification1.79E-03
65GO:0007005: mitochondrion organization2.38E-03
66GO:0010021: amylopectin biosynthetic process2.40E-03
67GO:0051781: positive regulation of cell division2.40E-03
68GO:0042274: ribosomal small subunit biogenesis2.40E-03
69GO:0071483: cellular response to blue light2.40E-03
70GO:0044205: 'de novo' UMP biosynthetic process2.40E-03
71GO:0009664: plant-type cell wall organization2.91E-03
72GO:0016123: xanthophyll biosynthetic process3.07E-03
73GO:0032543: mitochondrial translation3.07E-03
74GO:0010236: plastoquinone biosynthetic process3.07E-03
75GO:0008033: tRNA processing3.31E-03
76GO:0050665: hydrogen peroxide biosynthetic process3.79E-03
77GO:0009959: negative gravitropism3.79E-03
78GO:0006655: phosphatidylglycerol biosynthetic process3.79E-03
79GO:0016554: cytidine to uridine editing3.79E-03
80GO:0032973: amino acid export3.79E-03
81GO:0009228: thiamine biosynthetic process3.79E-03
82GO:0030488: tRNA methylation4.57E-03
83GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
84GO:0019509: L-methionine salvage from methylthioadenosine4.57E-03
85GO:0042372: phylloquinone biosynthetic process4.57E-03
86GO:0006458: 'de novo' protein folding4.57E-03
87GO:0034389: lipid particle organization4.57E-03
88GO:0017148: negative regulation of translation4.57E-03
89GO:0009942: longitudinal axis specification4.57E-03
90GO:1901259: chloroplast rRNA processing4.57E-03
91GO:0009630: gravitropism4.70E-03
92GO:0010583: response to cyclopentenone4.70E-03
93GO:0009828: plant-type cell wall loosening5.34E-03
94GO:0010103: stomatal complex morphogenesis5.40E-03
95GO:0048528: post-embryonic root development5.40E-03
96GO:0009772: photosynthetic electron transport in photosystem II5.40E-03
97GO:0043090: amino acid import5.40E-03
98GO:0070370: cellular heat acclimation5.40E-03
99GO:0010444: guard mother cell differentiation5.40E-03
100GO:0006400: tRNA modification5.40E-03
101GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.40E-03
102GO:0009231: riboflavin biosynthetic process6.27E-03
103GO:0048564: photosystem I assembly6.27E-03
104GO:0042255: ribosome assembly6.27E-03
105GO:0070413: trehalose metabolism in response to stress6.27E-03
106GO:0007389: pattern specification process7.19E-03
107GO:0001558: regulation of cell growth7.19E-03
108GO:0006526: arginine biosynthetic process7.19E-03
109GO:0010204: defense response signaling pathway, resistance gene-independent7.19E-03
110GO:0000373: Group II intron splicing8.16E-03
111GO:0006098: pentose-phosphate shunt8.16E-03
112GO:0080144: amino acid homeostasis8.16E-03
113GO:0019432: triglyceride biosynthetic process8.16E-03
114GO:0009098: leucine biosynthetic process9.17E-03
115GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.17E-03
116GO:0045036: protein targeting to chloroplast1.02E-02
117GO:0006298: mismatch repair1.02E-02
118GO:0006949: syncytium formation1.02E-02
119GO:0006259: DNA metabolic process1.02E-02
120GO:0006535: cysteine biosynthetic process from serine1.02E-02
121GO:0045087: innate immune response1.06E-02
122GO:0006265: DNA topological change1.13E-02
123GO:0009089: lysine biosynthetic process via diaminopimelate1.13E-02
124GO:0009073: aromatic amino acid family biosynthetic process1.13E-02
125GO:0005983: starch catabolic process1.25E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.25E-02
127GO:0045037: protein import into chloroplast stroma1.25E-02
128GO:0010114: response to red light1.37E-02
129GO:0050826: response to freezing1.37E-02
130GO:0006094: gluconeogenesis1.37E-02
131GO:2000012: regulation of auxin polar transport1.37E-02
132GO:0009409: response to cold1.49E-02
133GO:0010207: photosystem II assembly1.49E-02
134GO:0009965: leaf morphogenesis1.54E-02
135GO:0070588: calcium ion transmembrane transport1.61E-02
136GO:0071732: cellular response to nitric oxide1.61E-02
137GO:0006071: glycerol metabolic process1.74E-02
138GO:0006364: rRNA processing1.85E-02
139GO:0005992: trehalose biosynthetic process1.88E-02
140GO:0019344: cysteine biosynthetic process1.88E-02
141GO:0009116: nucleoside metabolic process1.88E-02
142GO:0009944: polarity specification of adaxial/abaxial axis1.88E-02
143GO:0051302: regulation of cell division2.01E-02
144GO:0019953: sexual reproduction2.01E-02
145GO:0016575: histone deacetylation2.01E-02
146GO:0006418: tRNA aminoacylation for protein translation2.01E-02
147GO:0015992: proton transport2.15E-02
148GO:0061077: chaperone-mediated protein folding2.15E-02
149GO:0031408: oxylipin biosynthetic process2.15E-02
150GO:0031348: negative regulation of defense response2.29E-02
151GO:0009814: defense response, incompatible interaction2.29E-02
152GO:0016226: iron-sulfur cluster assembly2.29E-02
153GO:0055114: oxidation-reduction process2.36E-02
154GO:0009416: response to light stimulus2.42E-02
155GO:0071369: cellular response to ethylene stimulus2.44E-02
156GO:0001944: vasculature development2.44E-02
157GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.44E-02
158GO:0009411: response to UV2.44E-02
159GO:0015979: photosynthesis2.71E-02
160GO:0016117: carotenoid biosynthetic process2.74E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.74E-02
162GO:0000413: protein peptidyl-prolyl isomerization2.90E-02
163GO:0006606: protein import into nucleus2.90E-02
164GO:0006508: proteolysis2.94E-02
165GO:0048868: pollen tube development3.06E-02
166GO:0006662: glycerol ether metabolic process3.06E-02
167GO:0007059: chromosome segregation3.22E-02
168GO:0019252: starch biosynthetic process3.39E-02
169GO:0008654: phospholipid biosynthetic process3.39E-02
170GO:0032502: developmental process3.72E-02
171GO:0042744: hydrogen peroxide catabolic process3.75E-02
172GO:0071281: cellular response to iron ion3.90E-02
173GO:0010252: auxin homeostasis4.07E-02
174GO:0006633: fatty acid biosynthetic process4.13E-02
175GO:0006413: translational initiation4.23E-02
176GO:0000910: cytokinesis4.43E-02
177GO:0001666: response to hypoxia4.62E-02
178GO:0009911: positive regulation of flower development4.62E-02
179GO:0005975: carbohydrate metabolic process4.84E-02
180GO:0009627: systemic acquired resistance4.99E-02
181GO:0006974: cellular response to DNA damage stimulus4.99E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
3GO:0015267: channel activity0.00E+00
4GO:0004358: glutamate N-acetyltransferase activity0.00E+00
5GO:0016018: cyclosporin A binding0.00E+00
6GO:0003937: IMP cyclohydrolase activity0.00E+00
7GO:0005363: maltose transmembrane transporter activity0.00E+00
8GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
9GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
10GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
11GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
12GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
13GO:0051721: protein phosphatase 2A binding0.00E+00
14GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0043014: alpha-tubulin binding0.00E+00
18GO:0004399: histidinol dehydrogenase activity0.00E+00
19GO:0004823: leucine-tRNA ligase activity0.00E+00
20GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.59E-06
21GO:0004176: ATP-dependent peptidase activity1.01E-05
22GO:0003723: RNA binding1.31E-05
23GO:0004519: endonuclease activity3.07E-05
24GO:0016149: translation release factor activity, codon specific4.34E-05
25GO:0008237: metallopeptidase activity7.19E-05
26GO:0001053: plastid sigma factor activity7.72E-05
27GO:0016987: sigma factor activity7.72E-05
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.52E-04
29GO:0010285: L,L-diaminopimelate aminotransferase activity3.52E-04
30GO:0005227: calcium activated cation channel activity3.52E-04
31GO:0008184: glycogen phosphorylase activity3.52E-04
32GO:0004645: phosphorylase activity3.52E-04
33GO:0004813: alanine-tRNA ligase activity3.52E-04
34GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity3.52E-04
35GO:0003747: translation release factor activity5.65E-04
36GO:0010291: carotene beta-ring hydroxylase activity7.67E-04
37GO:0003852: 2-isopropylmalate synthase activity7.67E-04
38GO:0004814: arginine-tRNA ligase activity7.67E-04
39GO:0004047: aminomethyltransferase activity7.67E-04
40GO:0019156: isoamylase activity7.67E-04
41GO:0003988: acetyl-CoA C-acyltransferase activity7.67E-04
42GO:0044183: protein binding involved in protein folding8.95E-04
43GO:0052692: raffinose alpha-galactosidase activity1.24E-03
44GO:0046524: sucrose-phosphate synthase activity1.24E-03
45GO:0002161: aminoacyl-tRNA editing activity1.24E-03
46GO:0042781: 3'-tRNA processing endoribonuclease activity1.24E-03
47GO:0004557: alpha-galactosidase activity1.24E-03
48GO:0019843: rRNA binding1.28E-03
49GO:0004222: metalloendopeptidase activity1.32E-03
50GO:0016887: ATPase activity1.58E-03
51GO:0043023: ribosomal large subunit binding1.79E-03
52GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.79E-03
53GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.79E-03
54GO:0019201: nucleotide kinase activity1.79E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity1.79E-03
56GO:0048487: beta-tubulin binding1.79E-03
57GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.79E-03
58GO:0016656: monodehydroascorbate reductase (NADH) activity1.79E-03
59GO:0016851: magnesium chelatase activity1.79E-03
60GO:0008891: glycolate oxidase activity2.40E-03
61GO:0004659: prenyltransferase activity2.40E-03
62GO:0016279: protein-lysine N-methyltransferase activity2.40E-03
63GO:0004045: aminoacyl-tRNA hydrolase activity2.40E-03
64GO:0019199: transmembrane receptor protein kinase activity2.40E-03
65GO:0042277: peptide binding2.40E-03
66GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.07E-03
67GO:0005275: amine transmembrane transporter activity3.07E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor3.07E-03
69GO:0030983: mismatched DNA binding3.79E-03
70GO:0004605: phosphatidate cytidylyltransferase activity3.79E-03
71GO:0080030: methyl indole-3-acetate esterase activity3.79E-03
72GO:0004332: fructose-bisphosphate aldolase activity3.79E-03
73GO:0004526: ribonuclease P activity3.79E-03
74GO:0004556: alpha-amylase activity3.79E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity4.57E-03
76GO:0004124: cysteine synthase activity4.57E-03
77GO:0008195: phosphatidate phosphatase activity4.57E-03
78GO:0004017: adenylate kinase activity4.57E-03
79GO:0004144: diacylglycerol O-acyltransferase activity4.57E-03
80GO:0004427: inorganic diphosphatase activity5.40E-03
81GO:0016597: amino acid binding6.02E-03
82GO:0043022: ribosome binding6.27E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.19E-03
84GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.19E-03
85GO:0009672: auxin:proton symporter activity9.17E-03
86GO:0004805: trehalose-phosphatase activity1.02E-02
87GO:0003746: translation elongation factor activity1.06E-02
88GO:0000049: tRNA binding1.25E-02
89GO:0004089: carbonate dehydratase activity1.37E-02
90GO:0005262: calcium channel activity1.37E-02
91GO:0019888: protein phosphatase regulator activity1.37E-02
92GO:0009982: pseudouridine synthase activity1.37E-02
93GO:0004565: beta-galactosidase activity1.37E-02
94GO:0010329: auxin efflux transmembrane transporter activity1.37E-02
95GO:0043621: protein self-association1.48E-02
96GO:0008266: poly(U) RNA binding1.49E-02
97GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.60E-02
98GO:0005525: GTP binding1.71E-02
99GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.74E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.74E-02
101GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.74E-02
102GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.85E-02
103GO:0051536: iron-sulfur cluster binding1.88E-02
104GO:0031418: L-ascorbic acid binding1.88E-02
105GO:0004407: histone deacetylase activity1.88E-02
106GO:0005528: FK506 binding1.88E-02
107GO:0003690: double-stranded DNA binding1.91E-02
108GO:0015171: amino acid transmembrane transporter activity2.05E-02
109GO:0030570: pectate lyase activity2.44E-02
110GO:0003727: single-stranded RNA binding2.59E-02
111GO:0051082: unfolded protein binding2.63E-02
112GO:0047134: protein-disulfide reductase activity2.74E-02
113GO:0004812: aminoacyl-tRNA ligase activity2.74E-02
114GO:0008536: Ran GTPase binding3.06E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.22E-02
116GO:0016853: isomerase activity3.22E-02
117GO:0010181: FMN binding3.22E-02
118GO:0016829: lyase activity3.56E-02
119GO:0030170: pyridoxal phosphate binding3.65E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.90E-02
121GO:0000156: phosphorelay response regulator activity3.90E-02
122GO:0003684: damaged DNA binding4.07E-02
123GO:0016791: phosphatase activity4.07E-02
124GO:0008483: transaminase activity4.25E-02
125GO:0016722: oxidoreductase activity, oxidizing metal ions4.25E-02
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Gene type



Gene DE type