gene detail

Gene description

TAIR ID: AT1G20510

Short description: OPC-8:0 CoA ligase1

Pathogen responsiveness: 0.20

General responsiveness: -0.54

Orthologous

Rice:

OS03G0132000 OS08G0143300 OS10G0578950 OS01G0901600

Maize:

GRMZM2G096020

Wheat: No orthologous gene

GO biological process

phenylpropanoid metabolic process, jasmonic acid biosynthetic process, metabolic process, response to wounding

GO cellular component

chloroplast, peroxisome, integral component of membrane

GO molecular function

4-coumarate-CoA ligase activity, ATP binding, ligase activity

Protein domain

Pfam	PF13193, AMP-binding enzyme C-terminal domain
Pfam	PF00501, AMP-binding enzyme

Metabolic pathway

PWY-735: jasmonic acid biosynthesis

KEGG pathway

PATH:ath00592: alpha-Linolenic acid metabolism

Transcriptional regulation

Regulator:
AT5G11260, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

29 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	2.19	4.45E-06
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.48	1.05E-06
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	1.70	3.18E-02
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	1.80	2.49E-02
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.53	1.54E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.53	3.37E-06
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	1.55	6.12E-11
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.96	4.07E-08
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	1.56	1.44E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-1.93	2.22E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-1.58	4.25E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.73	4.03E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.71	1.51E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.67	2.01E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.66	7.95E-09
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.22	1.27E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.79	1.36E-12
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	1.76	2.44E-04
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.98	4.12E-03
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.70	6.00E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	2.36	1.16E-10
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	2.34	1.10E-10
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	2.52	5.82E-09
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.59	2.53E-07
GSE56094	Col, WT, control 5 h	Col, WT, PstDC3000 5 h	1.80	3.08E-09
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	1.81	5.66E-10
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.60	2.08E-08
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.53	2.01E-08
GSE8319	Col, WT, control	Col, WT, chitooctaose 30 min	1.52	8.73E-08