gene detail

Gene description

TAIR ID: AT1G17200

Short description: Uncharacterised protein family (UPF0497)

Pathogen responsiveness: 0.59

General responsiveness: 1.11

Orthologous

Rice:

OS04G0281900 OS03G0196400

Maize:

GRMZM2G126586

Wheat: No orthologous gene

GO biological process

response to karrikin

GO cellular component

plasma membrane, integral component of membrane

GO molecular function

iron-sulfur cluster binding

Protein domain

Pfam	PF04535, Domain of unknown function (DUF588)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

29 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	-1.59	2.92E-13
GSE17464	Laer, control	Laer, Flg22 1 h	-1.55	9.61E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-1.84	1.71E-03
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.56	1.24E-02
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.15	1.07E-03
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.71	6.62E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.82	2.57E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.14	6.90E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.21	7.48E-04
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.92	1.73E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.08	4.00E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.56	4.26E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.30	1.68E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.27	1.17E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.68	2.88E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.47	5.67E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.68	2.74E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.66	2.23E-13
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.86	7.65E-13
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.72	3.38E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.57	3.73E-15
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	-1.69	4.56E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.54	2.99E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.65	1.78E-02
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.59	1.73E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-3.36	1.02E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.65	1.07E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.63	2.50E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.78	1.68E-03