gene detail

Gene description

TAIR ID: AT1G12860

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -0.56

General responsiveness: 1.32

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, response to freezing, guard mother cell differentiation, transcription

GO cellular component

nucleus

GO molecular function

protein dimerization activity, DNA binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
none

Target:
AT5G53210

Protein-protein interaction network

The number of partners (degree) is: 8

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.57	5.75E-06
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.51	5.10E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.70	1.26E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.91	4.93E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.82	1.26E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.13	1.91E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.80	3.12E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.04	3.91E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.66	9.38E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.04	3.37E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.68	2.41E-11
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.58	4.32E-04
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.56	1.64E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.67	8.09E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.69	5.53E-03