gene detail

Gene description

TAIR ID: AT1G09140

Short description: SERINE-ARGININE PROTEIN 30

Pathogen responsiveness: -1.68

General responsiveness: -0.01

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

regulation of mRNA splicing, via spliceosome, mRNA splice site selection

GO cellular component

spliceosomal complex, nucleus, nuclear speck, cytoplasm, interchromatin granule

GO molecular function

protein binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G07100, AT5G13790, AT3G09290, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 14 (Top20%)

Coexpression network

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.76	3.12E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.94	5.78E-10
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.59	3.48E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.72	8.76E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min	2.14	4.83E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	1.50	2.16E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	1.89	2.74E-03