gene detail

Gene description

TAIR ID: AT1G06570

Short description: phytoene desaturation 1

Pathogen responsiveness: -0.64

General responsiveness: 0.75

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G088396

Wheat:

TA.24336.1.S1_AT TA.24336.1.S1_X_AT

GO biological process

oxidation-reduction process, plastoquinone biosynthetic process, aromatic amino acid family metabolic process, L-phenylalanine catabolic process, tyrosine catabolic process, vitamin E biosynthetic process, carotenoid biosynthetic process

GO cellular component

cytosol, cytoplasm, chloroplast, mitochondrion

GO molecular function

metal ion binding, 4-hydroxyphenylpyruvate dioxygenase activity, identical protein binding

Protein domain

Pfam	PF00903, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Metabolic pathway

PWY-1581: plastoquinol-9 biosynthesis I
PWY-1422: vitamin E biosynthesis
PWY-5864: superpathway of plastoquinol biosynthesis
TYRFUMCAT-PWY: tyrosine degradation I

KEGG pathway

PATH:ath00350: Tyrosine metabolism
PATH:ath00360: Phenylalanine metabolism
PATH:ath00130: Ubiquinone and other terpenoid-quinone biosynthesis

Transcriptional regulation

Regulator:
AT5G53660, AT5G13790, AT3G27920, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.64	1.62E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.51	3.61E-03
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.85	2.98E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-1.72	7.73E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.70	4.09E-04
GSE37269	Oy0, WT, control	Oy0, WT, TEV 21 d	-2.45	2.24E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.81	7.19E-03
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.60	4.32E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	2.28	2.90E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.36	8.43E-09
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.91	2.80E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.55	1.06E-04
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.93	3.15E-06
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.57	1.17E-02
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min	1.86	3.49E-02