gene detail

Gene description

TAIR ID: AT1G06220

Short description: Ribosomal protein S5/Elongation factor G/III/V family protein

Pathogen responsiveness: NA

General responsiveness: -2.83

Orthologous

Rice:

OS06G0608300

Maize:

GRMZM2G316232

Wheat: No orthologous gene

GO biological process

regulation of embryo sac egg cell differentiation, mRNA processing, RNA splicing, embryo development ending in seed dormancy, floral organ development

GO cellular component

cell wall, plasma membrane, spliceosomal complex, nuclear speck, cytoplasm

GO molecular function

protein binding, GTP binding, GTPase activity, translation elongation factor activity

Protein domain

Pfam	PF03764, Elongation factor G, domain IV
Pfam	PF16004, 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Pfam	PF00679, Elongation factor G C-terminus
Pfam	PF00009, Elongation factor Tu GTP binding domain
Pfam	PF03144, Elongation factor Tu domain 2
SMART	SM00889, EFG_IV
SMART	SM00838, EFG_C

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT3G14230

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE13739_EDS16_GO view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.64	5.68E-06