gene detail

Gene description

TAIR ID: AT1G05890

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -1.00

General responsiveness: -1.43

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein ubiquitination involved in ubiquitin-dependent protein catabolic process, positive regulation of proteasomal ubiquitin-dependent protein catabolic process, protein ubiquitination, protein polyubiquitination

GO cellular component

nucleus, cytoplasm, ubiquitin ligase complex, integral component of membrane

GO molecular function

metal ion binding, ubiquitin-protein transferase activity, ubiquitin protein ligase activity, ubiquitin conjugating enzyme binding

Protein domain

Pfam	PF01485, IBR domain, a half RING-finger domain
SMART	SM00647, IBR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.53	3.36E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.16	1.14E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.53	2.96E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.11	1.01E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.34	5.17E-12
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.03	5.66E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.87	1.28E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.70	1.77E-13