co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
2	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
3	GO:0016236: macroautophagy	0.00E+00
4	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
5	GO:0009991: response to extracellular stimulus	0.00E+00
6	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	1.62E-06
8	GO:0051315: attachment of mitotic spindle microtubules to kinetochore	3.37E-05
9	GO:0030242: pexophagy	3.37E-05
10	GO:0007093: mitotic cell cycle checkpoint	3.37E-05
11	GO:0050684: regulation of mRNA processing	8.48E-05
12	GO:0032784: regulation of DNA-templated transcription, elongation	1.47E-04
13	GO:0006623: protein targeting to vacuole	1.78E-04
14	GO:0006893: Golgi to plasma membrane transport	2.18E-04
15	GO:0051601: exocyst localization	2.18E-04
16	GO:0016579: protein deubiquitination	2.65E-04
17	GO:0045324: late endosome to vacuole transport	2.95E-04
18	GO:0070534: protein K63-linked ubiquitination	2.95E-04
19	GO:0033320: UDP-D-xylose biosynthetic process	2.95E-04
20	GO:0007094: mitotic spindle assembly checkpoint	3.77E-04
21	GO:0018344: protein geranylgeranylation	3.77E-04
22	GO:0006656: phosphatidylcholine biosynthetic process	3.77E-04
23	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.63E-04
24	GO:0006301: postreplication repair	4.63E-04
25	GO:0042732: D-xylose metabolic process	4.63E-04
26	GO:0042176: regulation of protein catabolic process	4.63E-04
27	GO:0000209: protein polyubiquitination	6.14E-04
28	GO:0006401: RNA catabolic process	6.47E-04
29	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.10E-04
30	GO:0019375: galactolipid biosynthetic process	7.44E-04
31	GO:0016559: peroxisome fission	7.44E-04
32	GO:0030968: endoplasmic reticulum unfolded protein response	8.45E-04
33	GO:0009699: phenylpropanoid biosynthetic process	8.45E-04
34	GO:0060321: acceptance of pollen	8.45E-04
35	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.49E-04
36	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	9.49E-04
37	GO:2000280: regulation of root development	1.06E-03
38	GO:0010018: far-red light signaling pathway	1.06E-03
39	GO:0051726: regulation of cell cycle	1.16E-03
40	GO:0000398: mRNA splicing, via spliceosome	1.26E-03
41	GO:0072593: reactive oxygen species metabolic process	1.28E-03
42	GO:0000266: mitochondrial fission	1.40E-03
43	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.52E-03
44	GO:0055046: microgametogenesis	1.52E-03
45	GO:0009887: animal organ morphogenesis	1.65E-03
46	GO:0010039: response to iron ion	1.78E-03
47	GO:0010053: root epidermal cell differentiation	1.78E-03
48	GO:0009225: nucleotide-sugar metabolic process	1.78E-03
49	GO:0007031: peroxisome organization	1.78E-03
50	GO:0042753: positive regulation of circadian rhythm	1.91E-03
51	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.07E-03
52	GO:0016226: iron-sulfur cluster assembly	2.48E-03
53	GO:0030433: ubiquitin-dependent ERAD pathway	2.48E-03
54	GO:0009561: megagametogenesis	2.78E-03
55	GO:0048868: pollen tube development	3.25E-03
56	GO:0010154: fruit development	3.25E-03
57	GO:0008654: phospholipid biosynthetic process	3.59E-03
58	GO:0009791: post-embryonic development	3.59E-03
59	GO:0009630: gravitropism	3.93E-03
60	GO:0007264: small GTPase mediated signal transduction	3.93E-03
61	GO:0030163: protein catabolic process	4.10E-03
62	GO:0009639: response to red or far red light	4.28E-03
63	GO:0006886: intracellular protein transport	4.35E-03
64	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.02E-03
65	GO:0009816: defense response to bacterium, incompatible interaction	5.02E-03
66	GO:0009817: defense response to fungus, incompatible interaction	5.79E-03
67	GO:0048767: root hair elongation	5.99E-03
68	GO:0006499: N-terminal protein myristoylation	6.20E-03
69	GO:0048527: lateral root development	6.40E-03
70	GO:0009910: negative regulation of flower development	6.40E-03
71	GO:0009867: jasmonic acid mediated signaling pathway	6.82E-03
72	GO:0045087: innate immune response	6.82E-03
73	GO:0006887: exocytosis	7.69E-03
74	GO:0006631: fatty acid metabolic process	7.69E-03
75	GO:0009793: embryo development ending in seed dormancy	9.31E-03
76	GO:0009846: pollen germination	9.54E-03
77	GO:0051301: cell division	1.00E-02
78	GO:0009809: lignin biosynthetic process	1.00E-02
79	GO:0009585: red, far-red light phototransduction	1.00E-02
80	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-02
81	GO:0010224: response to UV-B	1.03E-02
82	GO:0006096: glycolytic process	1.13E-02
83	GO:0009742: brassinosteroid mediated signaling pathway	1.34E-02
84	GO:0009058: biosynthetic process	1.56E-02
85	GO:0009845: seed germination	1.59E-02
86	GO:0006633: fatty acid biosynthetic process	1.77E-02
87	GO:0016036: cellular response to phosphate starvation	1.80E-02
88	GO:0008380: RNA splicing	2.15E-02
89	GO:0015031: protein transport	2.38E-02
90	GO:0007049: cell cycle	2.79E-02
91	GO:0009723: response to ethylene	2.87E-02
92	GO:0046686: response to cadmium ion	2.91E-02
93	GO:0055114: oxidation-reduction process	3.24E-02
94	GO:0016042: lipid catabolic process	3.89E-02
95	GO:0009751: response to salicylic acid	3.93E-02
96	GO:0006629: lipid metabolic process	3.97E-02
97	GO:0048364: root development	4.10E-02
98	GO:0008152: metabolic process	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
2	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
3	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
4	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.41E-06
5	GO:0017049: GTP-Rho binding	3.37E-05
6	GO:0004105: choline-phosphate cytidylyltransferase activity	3.37E-05
7	GO:0008802: betaine-aldehyde dehydrogenase activity	3.37E-05
8	GO:0004750: ribulose-phosphate 3-epimerase activity	8.48E-05
9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.81E-05
10	GO:0005093: Rab GDP-dissociation inhibitor activity	1.47E-04
11	GO:0004180: carboxypeptidase activity	1.47E-04
12	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.91E-04
13	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.18E-04
14	GO:0003995: acyl-CoA dehydrogenase activity	2.95E-04
15	GO:0017137: Rab GTPase binding	3.77E-04
16	GO:0061630: ubiquitin protein ligase activity	4.27E-04
17	GO:0004029: aldehyde dehydrogenase (NAD) activity	4.63E-04
18	GO:0036402: proteasome-activating ATPase activity	4.63E-04
19	GO:0048040: UDP-glucuronate decarboxylase activity	4.63E-04
20	GO:0070403: NAD+ binding	5.53E-04
21	GO:0008195: phosphatidate phosphatase activity	5.53E-04
22	GO:0003924: GTPase activity	6.55E-04
23	GO:0016491: oxidoreductase activity	8.10E-04
24	GO:0004630: phospholipase D activity	8.45E-04
25	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	8.45E-04
26	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.06E-03
27	GO:0030234: enzyme regulator activity	1.17E-03
28	GO:0031624: ubiquitin conjugating enzyme binding	1.65E-03
29	GO:0017025: TBP-class protein binding	1.78E-03
30	GO:0043130: ubiquitin binding	2.05E-03
31	GO:0050660: flavin adenine dinucleotide binding	3.29E-03
32	GO:0004518: nuclease activity	3.93E-03
33	GO:0008236: serine-type peptidase activity	5.60E-03
34	GO:0005096: GTPase activator activity	5.99E-03
35	GO:0000166: nucleotide binding	9.19E-03
36	GO:0031625: ubiquitin protein ligase binding	1.08E-02
37	GO:0005524: ATP binding	1.22E-02
38	GO:0005507: copper ion binding	1.31E-02
39	GO:0016746: transferase activity, transferring acyl groups	1.31E-02
40	GO:0005525: GTP binding	1.52E-02
41	GO:0008017: microtubule binding	1.96E-02
42	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.24E-02
43	GO:0042802: identical protein binding	2.24E-02
44	GO:0004674: protein serine/threonine kinase activity	2.42E-02
45	GO:0004497: monooxygenase activity	3.01E-02
46	GO:0004871: signal transducer activity	3.54E-02
47	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.62E-02
48	GO:0009055: electron carrier activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005684: U2-type spliceosomal complex	0.00E+00
3	GO:0071561: nucleus-vacuole junction	0.00E+00
4	GO:0031595: nuclear proteasome complex	7.64E-06
5	GO:0008540: proteasome regulatory particle, base subcomplex	2.07E-05
6	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	3.37E-05
7	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	3.37E-05
8	GO:0000502: proteasome complex	4.42E-05
9	GO:0035061: interchromatin granule	8.48E-05
10	GO:0045254: pyruvate dehydrogenase complex	8.48E-05
11	GO:0005968: Rab-protein geranylgeranyltransferase complex	2.18E-04
12	GO:0031372: UBC13-MMS2 complex	2.95E-04
13	GO:0000776: kinetochore	3.77E-04
14	GO:0072686: mitotic spindle	3.77E-04
15	GO:0031597: cytosolic proteasome complex	5.53E-04
16	GO:0005737: cytoplasm	6.65E-04
17	GO:0005834: heterotrimeric G-protein complex	9.79E-04
18	GO:0030125: clathrin vesicle coat	1.17E-03
19	GO:0005686: U2 snRNP	1.17E-03
20	GO:0090404: pollen tube tip	1.28E-03
21	GO:0008541: proteasome regulatory particle, lid subcomplex	1.28E-03
22	GO:0005777: peroxisome	1.57E-03
23	GO:0005759: mitochondrial matrix	1.70E-03
24	GO:0005829: cytosol	1.87E-03
25	GO:0005634: nucleus	2.64E-03
26	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.12E-03
27	GO:0005770: late endosome	3.25E-03
28	GO:0000145: exocyst	3.93E-03
29	GO:0032580: Golgi cisterna membrane	4.28E-03
30	GO:0000151: ubiquitin ligase complex	5.79E-03
31	GO:0005643: nuclear pore	5.79E-03
32	GO:0031902: late endosome membrane	7.69E-03
33	GO:0009506: plasmodesma	7.71E-03
34	GO:0005886: plasma membrane	8.76E-03
35	GO:0005856: cytoskeleton	8.82E-03
36	GO:0005635: nuclear envelope	1.05E-02
37	GO:0005681: spliceosomal complex	1.13E-02
38	GO:0016607: nuclear speck	1.15E-02
39	GO:0009524: phragmoplast	1.56E-02