gene detail

Gene description

TAIR ID: AT1G02840

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: -2.94

General responsiveness: -1.56

Orthologous

Rice:

Maize:

Wheat:

GO biological process

RNA splicing, mRNA processing

GO cellular component

nuclear speck, interchromatin granule, nucleus, spliceosomal complex

GO molecular function

protein binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 15 (Top20%)

Coexpression network

GSE26679_WT_GC view
GSE26679_EDR1_GC view

Differentially expressed condition

2 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.52	9.82E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.91	1.40E-02