Q96QK1 (VPS35)

Homo sapiens

P27958 (NA)

Hepatitis C virus genotype 1a (isolate H) (HCV)
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Human protein: VPS35_HUMAN

UniProtID: Q96QK1

Gene name(s): VPS35;MEM3;TCCCTA00141

Protein name: Vacuolar protein sorting-associated protein 35

Gene ID: 55737

HDF/HRF: NA

Virus protein: POLG_HCVH (HCV-H)

UniProtID: P27958

Gene name(s): NA

Protein name: Genome polyprotein

Gene ID: NA

Viral family: Flaviviridae


InteractionSource databasePubMed IDDetection method
Q96QK1-P27958PHISTO17616579Other Methods

Evidence suggesting a protein interaction:

Interolog evidence: none/insignificant.
DDI evidence: yes (score 0.016). Show
Machine learning evidence: yes (score 0.145).
Combined Score: 0.212


Virally targeted human complex

Complex idComplex nameComplex sizeTarget ratioPudMed IDSourceDetail
1059Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A)50.20 (1/5)11102511CORUMView
1060Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26B)50.20 (1/5)11102511CORUMView
656VPS35-VPS29-VPS26A complex30.33 (1/3)11102511CORUMView
657Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A)50.20 (1/5)16732284CORUMView
397VPS35-VPS29-VPS26A complex110.09 (1/11)NAhu.MAPView
3924Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26B)50.20 (1/5)NAhu.MAPView

Differentially expression condition

SeriesControlTreatmentRegulationLog2FCAdj.P.ValData type
GSE30589Vero_E6_Mock_infected_15hpiVero_E6_SARS-Cov_DeltaE_15hpidown-2.211.21e-06Microarray data
GSE30589Vero_E6_Mock_infected_15hpiVero_E6_SARS-Cov_WT_15hpidown-2.091.16e-06Microarray data
GSE65574MCL001_mock_0hMCL001_RFP-MERS_0hdown-1.869.35e-03Microarray data
GSE65574MCL001_mock_12hMCL001_d4B-MERS_12hdown-2.116.71e-05Microarray data
GSE65574MCL001_mock_7hMCL001_RFP-MERS_7hdown-2.006.13e-04Microarray data
GSE89008HTBE_H5N1_MOI0_mock_infected_12hHTBE_H5N1_MOI5_infected_12hdown-1.584.70e-18RNA-Seq data
GSE89008HTBE_H5N1_MOI0_mock_infected_18hHTBE_H5N1_MOI5_infected_18hdown-2.249.60e-42RNA-Seq data
GSE97672-GPL16791MDM-418_H3N2_MOI0_18hMDM-418_H3N2_MOI2_18hdown-1.904.95e-30RNA-Seq data
GSE97672-GPL16791MDM-520_H5N1_MOI0_12hMDM-520_H5N1_MOI2_12hdown-1.991.42e-29RNA-Seq data
GSE97672-GPL16791MDM-520_H5N1_MOI0_18hMDM-520_H5N1_MOI2_18hdown-2.578.16e-51RNA-Seq data
GSE97672-GPL18573MDM-513_H5N1_MOI0_18hMDM-513_H5N1_MOI2_18hdown-2.668.04e-83RNA-Seq data

Human tissue specific expression (TPM)

Small intestine: 7.5 Liver: 1.7 Gallbladder: 7.8 Duodenum: 5.3 Rectum: 5.8 Tonsil: 5.5 Stomach: 5.0 Salivary glanda: 1.6 Adipose tissue: 6.8 Lung: 9.7 Lymph node: 6.6 Pancreas: 0.5 Kidney: 5.6 Colon: 5.0 Appendix: 7.5 Smooth musle: 8.2 Breast: 8.6 Parathyroid gland: 15.8 Esophagus: 5.4 Heart muscle: 3.9 Spleen: 9.2 Skeletal muscle: 2.0 Bone marrow: 6.1 Skin: 10.7 Urinary bladder: 7.2 Cervix, uterine: 9.0 Endometrium: 9.4 Ovary: 8.5 Fallopian tube: 10.4 Seminal vesicle: 7.4 Prostate: 9.1 Epididymis: 10.2 Testis: 6.7 Placenta: 7.4 Thyroid gland: 8.1 Cerebral cortex: 9.1 Adrenal gland: 6.4
Expression value is measured by Transcripts Per Million (TPM)
Low tissue specificity
Ensembl ID:ENSG00000069329
Gene description:VPS35, retromer complex component
Chromosome:16
Position46656132-46689518
Protein class:Disease related genes, Plasma proteins, Predicted intracellular proteins
Evidence:Evidence at protein level
Subcellular location:Endosomes, Lysosomes