gene detail

Gene description

Short description: Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.

Orthologous

Arabidopsis:

AT1G05200

Maize:

GRMZM2G057459

Wheat:

TAAFFX.78473.1.S1_AT

GO biological process

transport (GO:0006810)

GO cellular component

membrane (GO:0016020), outer membrane-bounded periplasmic space (GO:0030288)

GO molecular function

ionotropic glutamate receptor activity (GO:0004970), transporter activity (GO:0005215), extracellular-glutamate-gated ion channel activity (GO:0005234)

Protein domain

Pfam	PF01094, Receptor family ligand binding region
Pfam	PF00060, Ligand-gated ion channel
Pfam	PF00497, Bacterial extracellular solute-binding proteins, family 3
SMART	SM00079, PBPe

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE62893_R_15B  view
GSE62894_R_77  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

18 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE19239	Japonica 9804, Rxo1, control	Japonica 9804, Rxo1, X. oryzae pv. oryzicola	-3.87	4.73E-08
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	-2.61	4.00E-13
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	-2.16	4.52E-11
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	-2.83	5.53E-14
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	-2.14	5.76E-11
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	-2.81	6.66E-14
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 3 h	-2.06	1.29E-10
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME2	1.51	1.90E-05
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME1	1.61	3.30E-06
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME2	1.54	8.05E-06
GSE62894	Nipponbare, pish, water 3 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 3 d	-3.10	1.65E-02
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-9.39	1.92E-10
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	-2.63	3.67E-02
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	-3.67	1.44E-03
GSE62895	Nipponbare, Pia, water 5 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 5 d	-3.53	6.31E-03
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	-2.90	6.99E-03
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	-2.40	2.63E-02
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	-3.80	1.49E-12