gene detail

Gene description

RAP-DB: OS06G0237200

Short description: Similar to DNA polymerase lambda.

Orthologous

Arabidopsis:

AT1G10520

Maize:

GRMZM5G833563

Wheat: No orthologous

GO biological process

DNA repair (GO:0006281)

GO cellular component

intracellular (GO:0005622)

GO molecular function

DNA binding (GO:0003677), catalytic activity (GO:0003824), DNA-directed DNA polymerase activity (GO:0003887), nucleotidyltransferase activity (GO:0016779)

Protein domain

Pfam	PF14792, DNA polymerase beta palm
Pfam	PF14716, Helix-hairpin-helix domain
Pfam	PF14791, DNA polymerase beta thumb
Pfam	PF10391, Fingers domain of DNA polymerase lambda
SMART	SM00483, POLXc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:dosa03410: Base excision repair
PATH:dosa03450: Non-homologous end-joining

Coexpression network

GSE63047_T7174R view
GSE63047_DELTAHRCV view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE19239	Japonica 9804, Rxo1, control	Japonica 9804, Rxo1, X. oryzae pv. oryzicola	1.82	3.44E-05
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	1.84	1.61E-02
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	2.28	4.04E-03
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99A_2	-1.56	3.77E-06
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-3.24	1.78E-07
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	-1.70	2.54E-03