gene detail

Gene description

RAP-DB: OS05G0589200

Short description: RNA polymerase sigma factor, region 2 domain containing protein.

Orthologous

Arabidopsis: No orthologous

Maize:

GRMZM5G830932

Wheat:

TAAFFX.4773.1.S1_AT

GO biological process

transcription initiation, DNA-dependent (GO:0006352), regulation of transcription, DNA-dependent (GO:0006355)

GO cellular component

unknown

GO molecular function

DNA binding (GO:0003677), sequence-specific DNA binding transcription factor activity (GO:0003700), sigma factor activity (GO:0016987)

Protein domain

Pfam	PF04542, Sigma-70 region 2
Pfam	PF04539, Sigma-70 region 3

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE33411_IRBB7  view
GSE62893_R_15B  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

20 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE19239	Japonica 9804, Rxo1, control	Japonica 9804, Rxo1, X. oryzae pv. oryzicola	2.97	2.68E-09
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	2.19	3.02E-07
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 6 h	1.94	9.15E-06
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	4.21	5.71E-13
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	2.48	3.40E-08
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 6 h	2.34	4.81E-07
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	4.33	3.57E-13
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	2.63	9.29E-09
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 6 h	2.28	6.72E-07
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 3 h	4.36	2.69E-13
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain BLS303	-2.43	2.82E-05
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO86	-1.83	1.72E-03
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain _PXO99A	-1.93	4.79E-04
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME1	-4.89	1.46E-11
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME2	-4.33	5.15E-10
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME5	-2.40	2.54E-05
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99A_2	-4.18	4.92E-10
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME1	-6.38	2.10E-15
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME2	-7.11	8.14E-17
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99A_2	-6.57	7.85E-16