gene detail

Gene description

RAP-DB: OS05G0408900

Short description: Similar to 1-deoxy-D-xylulose-5-phosphate synthase.

Orthologous

Arabidopsis: No orthologous

Maize:

GRMZM2G137151

Wheat: No orthologous

GO biological process

metabolic process (GO:0008152), terpenoid biosynthetic process (GO:0016114)

GO cellular component

unknown

GO molecular function

oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor (GO:0016624), catalytic activity (GO:0003824), 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661)

Protein domain

Pfam	PF13292, 1-deoxy-D-xylulose-5-phosphate synthase
Pfam	PF02780, Transketolase, C-terminal domain
Pfam	PF02779, Transketolase, pyrimidine binding domain
SMART	SM00861, Transket_pyr

Metabolic pathway

NONMEVIPP-PWY: methylerythritol phosphate pathway I
PWY-7560: methylerythritol phosphate pathway II
PWY-5121: superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP)

KEGG pathway

PATH:dosa00730: Thiamine metabolism
PATH:dosa00900: Terpenoid backbone biosynthesis

Coexpression network

GSE62894_S_77  view
GSE33411_IRBB7  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62893_R_15B  view
GSE33411_IR24  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	-3.91	5.74E-18
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	-3.83	1.15E-17
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	-3.73	1.86E-17
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain BLS303	-3.10	5.66E-04
GSE39635	OsWRKY28 overexpression, water 48 h	OsWRKY28 overexpression, Magnaporthe Oryzae 48 h	-1.87	1.00E-02
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-3.37	2.00E-03
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	-3.09	2.91E-02
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	-3.32	5.04E-03
GSE62895	Nipponbare, Pia, water 5 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 5 d	-3.77	6.55E-03
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	-4.48	5.66E-04
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	-4.91	3.52E-04
GSE63337	Nipponbare, Osaba1_1, Xanthomonas oryzae pv. Oryzae PXO99 0 h	Nipponbare, Osaba1_1, Xanthomonas oryzae pv. Oryzae PXO99 72 h	-3.46	5.71E-04
GSE63337	Nipponbare, WT, Xanthomonas oryzae pv. Oryzae PXO99 0 h	Nipponbare, WT, Xanthomonas oryzae pv. Oryzae PXO99 72 h	-1.86	3.13E-02
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	-2.84	1.16E-03