gene detail

Gene description

RAP-DB: OS05G0219800

Short description: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site domain containing protein.

Orthologous

Arabidopsis:

AT1G79890

Maize:

GRMZM2G100067

Wheat: No orthologous

GO biological process

nucleobase-containing compound metabolic process (GO:0006139)

GO cellular component

unknown

GO molecular function

nucleic acid binding (GO:0003676), DNA binding (GO:0003677), ATP-dependent DNA helicase activity (GO:0004003), ATP binding (GO:0005524), ATP-dependent helicase activity (GO:0008026), hydrolase activity, acting on acid anhydrides (GO:0016817), hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (GO:0016818)

Protein domain

Pfam	PF06733, DEAD_2
Pfam	PF13307, Helicase C-terminal domain
SMART	SM00491, HELICc2
SMART	SM00488, DEXDc2
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Coexpression network

GSE62894_S_77  view
GSE62893_S_15B  view
GSE16793_XOO  view
GSE62894_R_77  view

Differentially expressed condition

10 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain _PXO99A	5.45	5.23E-12
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME1	4.42	1.36E-09
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME2	3.96	2.90E-08
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME5	4.63	3.97E-10
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99A_2	4.60	3.54E-10
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain _PXO99A	3.88	8.70E-08
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME1	1.97	1.35E-03
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME5	3.66	2.91E-07
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99A_2	2.33	1.73E-04
GSE63337	Nipponbare, WT, Xanthomonas oryzae pv. Oryzae PXO99 0 h	Nipponbare, WT, Xanthomonas oryzae pv. Oryzae PXO99 72 h	2.11	2.27E-03