gene detail

Gene description

RAP-DB: OS03G0834000

Short description: Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b).

Orthologous

Arabidopsis: No orthologous

Maize:

GRMZM2G398668

Wheat:

TAAFFX.38123.1.S1_AT

GO biological process

DNA repair (GO:0006281)

GO cellular component

unknown

GO molecular function

DNA binding (GO:0003677), catalytic activity (GO:0003824), nuclease activity (GO:0004518), 5'-3' exonuclease activity (GO:0008409), hydrolase activity, acting on ester bonds (GO:0016788)

Protein domain

Pfam	PF00752, XPG N-terminal domain
Pfam	PF00867, XPG I-region
SMART	SM00475, 53EXOc
SMART	SM00279, HhH2
SMART	SM00484, XPGI
SMART	SM00485, XPGN

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:dosa03030: DNA replication
PATH:dosa03410: Base excision repair
PATH:dosa03450: Non-homologous end-joining

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE62894_R_77  view
GSE33411_IR24  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	1.64	6.42E-09
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	1.95	1.66E-10
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-5.45	5.45E-09
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	3.39	1.56E-02
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	4.41	2.99E-04
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	3.77	1.00E-03
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	2.23	3.36E-02
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	-1.66	1.85E-02
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	-1.52	1.44E-02