gene detail

Gene description

TAIR ID: AT5G67380

Short description: casein kinase alpha 1

Pathogen responsiveness: -2.14

General responsiveness: -2.12

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

DNA repair, response to gamma radiation, chromatin organization, protein phosphorylation, regulation of circadian rhythm, regulation of response to DNA damage stimulus, circadian rhythm, response to UV-C, regulation of cell cycle

GO cellular component

protein kinase CK2 complex, nucleus, nucleolus

GO molecular function

protein binding, protein serine/threonine kinase activity, kinase activity, ATP binding

Protein domain

Pfam	PF00069, Protein kinase domain
SMART	SM00220, S_TKc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03008: Ribosome biogenesis in eukaryotes
PATH:ath04712: Circadian rhythm - plant

Transcriptional regulation

Regulator:
AT5G53660, AT5G41315, AT5G61850, AT3G20770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.10	7.09E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.69	2.86E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.29	1.27E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.22	1.28E-11