Gene: AT5G66520
Gene description
TAIR ID: AT5G66520
Short description: Tetratricopeptide repeat (TPR)-like superfamily protein
Pathogen responsiveness: 0.03
General responsiveness: 0.80
GO biological process
chloroplast RNA modification, cytidine to uridine editing
GO cellular component
chloroplast
GO molecular function
RNA binding, endonuclease activity, zinc ion binding
Protein domain
| Pfam | PF12854, PPR repeat |
| Pfam | PF14432, DYW family of nucleic acid deaminases |
| Pfam | PF01535, PPR repeat |
| Pfam | PF13041, PPR repeat family |
KEGG pathway
Not involved in KEGG pathway
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
19 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE12856 | Col, WT, control | Col, WT, Bg h | -1.91 | 2.06E-08 |
| GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | -1.90 | 1.48E-08 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -2.08 | 1.43E-10 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 AvrRpt2 | -2.18 | 1.06E-04 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | -2.32 | 5.01E-05 |
| GSE40544 | Col, Sid2, control | Col, Sid2, PstDC3000 AvrRpt2 | -2.12 | 1.45E-04 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -3.89 | 1.09E-14 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | -1.97 | 4.88E-10 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -3.15 | 2.57E-13 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -3.45 | 5.33E-14 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -2.94 | 6.12E-13 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -3.60 | 2.63E-14 |
| GSE45214 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | -1.66 | 1.70E-07 |
| GSE45214 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -2.12 | 5.53E-09 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -3.35 | 2.28E-12 |
| GSE45214 | Col, npr1, PstDC3000 AvrRpt2 0 h | Col, npr1, PstDC3000 AvrRpt2 4 h | -1.54 | 6.47E-07 |
| GSE52979 | Col, WT, oxo_C14_HSL | Col, WT, oxo_C14_HSL flg22_2 h | -1.51 | 1.14E-06 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.81 | 3.85E-03 |
| GSE6556 | Col, gh3.5, control | Col, gh3.5, PstDC3000 AvrRpt2 48 h | -1.63 | 1.56E-04 |
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